View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_63 (Length: 308)
Name: NF15932_high_63
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_63 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 33 - 292
Target Start/End: Complemental strand, 32664536 - 32664263
Alignment:
| Q |
33 |
atgataacattgacatttgttatctcacaaatgtatggaagctgaaaaatgaagcaattgaatagggaaggttggaaattttttgttcaactttattgga |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32664536 |
atgataacattgacatttgttatctcacaaatgtatggaagctgaaaaatgaagcaattgaatagggaaggttggaaattttttgtacaactttattgga |
32664437 |
T |
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| Q |
133 |
ttagatagaaactaagagtgtatgaatcaaagaaaagagacaccacaacaacacaattatagcttaaggatgactcaagcttagtaaacaaatcaa---- |
228 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32664436 |
ttagatagaaactaagagtgtacgaatc-aagaaaagagacgccacaacaacacaattatagcttaaggatgactcaagcttagtaaacaaatcaagttt |
32664338 |
T |
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| Q |
229 |
-----------gtcatgttatcacaatgcttgctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32664337 |
tttttagcggtgtcatgttatcacaatgcttgctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
32664263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 33 - 292
Target Start/End: Original strand, 9082633 - 9082906
Alignment:
| Q |
33 |
atgataacattgacatttgttatctcacaaatgtatggaagctgaaaaatgaagcaattgaatagggaaggttggaaattttttgttcaactttattgga |
132 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9082633 |
atgataacattgacatttgttatctcacaaatgtatagaagctgaaaaatgaatcaattgaatagggaaggttggaaattttttgtacaactttattgga |
9082732 |
T |
|
| Q |
133 |
ttagatagaaactaagagtgtatgaatcaaagaaaagagacaccacaacaacacaattatagcttaaggatgactcaagcttagtaaacaaatcaa---- |
228 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082733 |
ttagatcgaaactaagagtgtatgaatc-aagaaaagagacgccacaacaacacaattatagcttaaggatgactcaagcttagtaaacaaatcaagttt |
9082831 |
T |
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| Q |
229 |
-----------gtcatgttatcacaatgcttgctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082832 |
tttttagaggtgtcatgttatcacaatgcttgctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
9082906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 33 - 292
Target Start/End: Original strand, 6413837 - 6414110
Alignment:
| Q |
33 |
atgataacattgacatttgttatctcacaaatgtatggaagctgaaaaatgaagcaattgaatagggaaggttggaaattttttgttcaactttattgga |
132 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6413837 |
atgataacattgacatttgttatctcacaaatgtatagaagctgaaaaatgaatcaattgaatagggaaggttggaaattttttgtacaactttattgga |
6413936 |
T |
|
| Q |
133 |
ttagatagaaactaagagtgtatgaatcaaagaaaagagacaccacaacaacacaattatagcttaaggatgactcaagcttagtaaacaaatcaa---- |
228 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413937 |
ttagatcgaaactaagagtgtatgaatc-aagaaaagagacgccacaacaacacaattatagcttaaggatgactcaagcttagtaaacaaatcaagttt |
6414035 |
T |
|
| Q |
229 |
-----------gtcatgttatcacaatgcttgctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6414036 |
tttttagaggtgtcatgttatcacaatgcttgctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
6414110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 26297262 - 26297404
Alignment:
| Q |
163 |
agaaaagagacaccacaacaacacaattatagcttaaggatgactcaagcttagtaaacaaatcaa----------------gtcatgttatcacaatgc |
246 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||| |
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| T |
26297262 |
agaaaagagacgccacaacaacgcaattatagcttaaggatgactcaagcttaataaataaatcaagtttttttttagaggtgtcatgtta-cacaatgc |
26297360 |
T |
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| Q |
247 |
ttgctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297361 |
--gctgaagaaaaaccaaagcttacattagaaaatagaaaagaaaa |
26297404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 26297179 - 26297234
Alignment:
| Q |
47 |
atttgttatctcacaaatgtatggaagctgaaaaatgaagcaattgaatagggaag |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297179 |
atttgttatctcacaaatgtatggaagctgaaaaatgaagcaattgaatagggaag |
26297234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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