View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_64 (Length: 306)

Name: NF15932_high_64
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_64
NF15932_high_64
[»] chr8 (7 HSPs)
chr8 (95-241)||(38638064-38638210)
chr8 (44-96)||(35033812-35033864)
chr8 (44-96)||(1051982-1052034)
chr8 (242-283)||(38638063-38638104)
chr8 (44-96)||(28982076-28982126)
chr8 (44-96)||(28987296-28987346)
chr8 (44-97)||(16886009-16886061)
[»] chr6 (15 HSPs)
chr6 (20-96)||(18360644-18360720)
chr6 (44-96)||(6928841-6928893)
chr6 (44-97)||(15299232-15299285)
chr6 (44-96)||(6955415-6955467)
chr6 (44-96)||(17311013-17311065)
chr6 (44-96)||(25465216-25465268)
chr6 (44-96)||(25314392-25314444)
chr6 (44-96)||(26201886-26201938)
chr6 (44-96)||(17703524-17703576)
chr6 (44-97)||(15330867-15330920)
chr6 (44-98)||(1537092-1537145)
chr6 (44-96)||(21894638-21894687)
chr6 (44-96)||(25558687-25558736)
chr6 (44-96)||(19215581-19215632)
chr6 (44-98)||(22408060-22408111)
[»] chr4 (13 HSPs)
chr4 (44-96)||(3096380-3096432)
chr4 (44-96)||(29454106-29454158)
chr4 (44-96)||(29447422-29447474)
chr4 (44-96)||(51930923-51930975)
chr4 (44-97)||(6457487-6457540)
chr4 (44-97)||(38637353-38637406)
chr4 (44-97)||(49239590-49239643)
chr4 (44-96)||(3265363-3265415)
chr4 (44-96)||(26396984-26397036)
chr4 (44-96)||(49748305-49748357)
chr4 (47-96)||(11938462-11938511)
chr4 (44-96)||(44656513-44656564)
chr4 (44-96)||(44662432-44662483)
[»] chr3 (10 HSPs)
chr3 (44-96)||(10383262-10383314)
chr3 (44-96)||(10424053-10424105)
chr3 (44-97)||(14843921-14843974)
chr3 (44-96)||(3109798-3109850)
chr3 (44-96)||(23825584-23825636)
chr3 (44-99)||(43722845-43722900)
chr3 (44-96)||(14951648-14951700)
chr3 (44-96)||(16413059-16413111)
chr3 (44-97)||(50654770-50654822)
chr3 (44-96)||(29494875-29494927)
[»] scaffold1026 (1 HSPs)
scaffold1026 (44-96)||(588-640)
[»] scaffold0136 (1 HSPs)
scaffold0136 (44-96)||(391-443)
[»] scaffold0126 (1 HSPs)
scaffold0126 (44-96)||(29004-29056)
[»] chr7 (12 HSPs)
chr7 (44-96)||(8195981-8196033)
chr7 (44-96)||(8212684-8212736)
chr7 (44-97)||(12398619-12398672)
chr7 (44-96)||(12756979-12757031)
chr7 (44-98)||(751180-751234)
chr7 (44-96)||(40921679-40921730)
chr7 (44-96)||(48986703-48986755)
chr7 (44-97)||(5186014-5186066)
chr7 (44-96)||(40683544-40683596)
chr7 (44-96)||(49151944-49151994)
chr7 (44-96)||(49158632-49158682)
chr7 (44-96)||(13595962-13596013)
[»] chr5 (7 HSPs)
chr5 (44-96)||(1110444-1110496)
chr5 (44-96)||(22246995-22247047)
chr5 (44-96)||(38014995-38015046)
chr5 (20-96)||(24009315-24009392)
chr5 (27-96)||(15462764-15462834)
chr5 (44-97)||(10687430-10687482)
chr5 (44-96)||(40009747-40009798)
[»] chr2 (9 HSPs)
chr2 (44-96)||(18979638-18979690)
chr2 (44-96)||(11358980-11359032)
chr2 (44-96)||(36983303-36983355)
chr2 (46-97)||(21606095-21606146)
chr2 (44-97)||(20938918-20938971)
chr2 (44-96)||(24480368-24480419)
chr2 (44-97)||(35586736-35586788)
chr2 (52-96)||(42553119-42553163)
chr2 (44-96)||(23887116-23887166)
[»] scaffold0072 (1 HSPs)
scaffold0072 (44-96)||(62796-62848)
[»] chr1 (12 HSPs)
chr1 (44-96)||(31534026-31534078)
chr1 (44-96)||(31550819-31550871)
chr1 (44-96)||(52400180-52400232)
chr1 (44-96)||(26722471-26722523)
chr1 (20-96)||(38906766-38906841)
chr1 (47-96)||(37676748-37676797)
chr1 (47-96)||(37683419-37683468)
chr1 (20-96)||(18419436-18419513)
chr1 (44-97)||(36210640-36210692)
chr1 (44-96)||(1525607-1525658)
chr1 (44-96)||(12203966-12204017)
chr1 (44-96)||(36210752-36210803)
[»] scaffold0430 (1 HSPs)
scaffold0430 (44-96)||(14780-14832)
[»] scaffold0276 (1 HSPs)
scaffold0276 (44-96)||(20849-20901)
[»] scaffold0041 (1 HSPs)
scaffold0041 (44-96)||(51365-51416)
[»] scaffold0137 (1 HSPs)
scaffold0137 (44-96)||(25115-25167)
[»] scaffold0089 (1 HSPs)
scaffold0089 (44-96)||(17282-17333)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 38638210 - 38638064
Alignment:
Q  95 cagcatctgccgcgaccgaagctgccaatactgcaaaaatggcggctgatcagaaacatggaaggtggtgggtcaagacactgttaaaacttgcggacaa 194  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  38638210 cagcatctgccgcgaccgaagctgccaatgctgcaaaaatggcggctgatcaaaaacatggaaggtggtgggtcaagacactgttaaaacttgcggataa 38638111  T
Q  195 actcagtgaccttagtcttcacataatcgtcgttgttgtaagtttct 241  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||    
T  38638110 actcaatgaccttagtcttcacatagccgtcgttgttgtaagtttct 38638064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 35033812 - 35033864
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35033812 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 35033864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 1051982 - 1052034
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1051982 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 1052034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 38638104 - 38638063
Alignment:
Q  242 tgaccttagtcttcacatagccgtcgttgttgtaagtttctc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38638104 tgaccttagtcttcacatagccgtcgttgttgtaagtttctc 38638063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 28982076 - 28982126
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||||||||||    
T  28982076 atatatactccacataat--aaaattaattaaataaataactagggcgttaca 28982126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 28987296 - 28987346
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||||||||||    
T  28987296 atatatactccacataat--aaaattaattaaataaataactagggcgttaca 28987346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 16886061 - 16886009
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||| || ||| |||||||||||||  |||||||||||||||    
T  16886061 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttacag 16886009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 18360644 - 18360720
Alignment:
Q  20 aatcacaaaacatcatatacactaatatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18360644 aatcacaaagcatcatatataataatatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 18360720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 6928893 - 6928841
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6928893 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 6928841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 15299232 - 15299285
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  15299232 atatatactccacatagtttaaaattaattaaataaataattagggcgttacag 15299285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 6955415 - 6955467
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  6955415 atatatactccacatagtataaaattaattaaataaataactagggcgttaca 6955467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 17311013 - 17311065
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  17311013 atatatactccacatagtttaaaattaattaaataaataattagggcgttaca 17311065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 25465216 - 25465268
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  25465216 atatatactcctcatagtttaaaattaattaaataaataactagggcgttaca 25465268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 25314444 - 25314392
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  25314444 atatatactccacataattttaaattaattaaataaataactagggcgttaca 25314392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 26201938 - 26201886
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  26201938 atatatactccacataattttaaattaattaaataaataactagggcgttaca 26201886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 17703524 - 17703576
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||||||  | |||||||||||||||||| ||||||||||||||    
T  17703524 atatatactccacataaatcaaaattaattaaataaataactagggcgttaca 17703576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 15330920 - 15330867
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||| ||||||| |||||||||||| |||||||||||| | |||||||||||||    
T  15330920 atatttactccaaatagtttaaaataaattaaataaataaatagggcgttacag 15330867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 1537145 - 1537092
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacagc 98  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||||    
T  1537145 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttacagc 1537092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 21894687 - 21894638
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||||||  ||||||| |||||||||||| ||||||||||||||    
T  21894687 atatatactccacata--ttaaaat-aattaaataaataactagggcgttaca 21894638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 25558736 - 25558687
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||||||||||    
T  25558736 atatatactccacataat--aaaattaattaaataaat-actagggcgttaca 25558687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 19215581 - 19215632
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||    
T  19215581 atatatactccacatacttcaaa-ttaattaaataaacaactagggcgttaca 19215632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 22408060 - 22408111
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacagc 98  Q
    |||||||||||||||| |   ||| ||||||||||||| ||||||||||||||||    
T  22408060 atatatactccacataat---aaaataattaaataaataactagggcgttacagc 22408111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 3096432 - 3096380
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3096432 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 3096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 29454158 - 29454106
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29454158 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 29454106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 29447474 - 29447422
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29447474 atatatactccacatagtttaaaattaattaaataaatcactaggacgttaca 29447422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 51930975 - 51930923
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51930975 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 51930923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 6457540 - 6457487
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  6457540 atatatactccacatagtttacaattaattaaataaataactagggcgttacag 6457487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 38637406 - 38637353
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  38637406 atatatactccacatagtttaaaattaattaaataaataattagggcgttacag 38637353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 49239643 - 49239590
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  49239643 atatatactccacatagtataaaattaattaaataaataactagggcgttacag 49239590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 3265415 - 3265363
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  3265415 atatatactccacatagtataaaattaattaaataaataactagggcgttaca 3265363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 26396984 - 26397036
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26396984 atatatactccacatagtttaaaattaattaaataaataattagggcgttaca 26397036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 49748357 - 49748305
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  49748357 atatatactccacatagtataaaattaattaaataaataactagggcgttaca 49748305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 11938462 - 11938511
Alignment:
Q  47 tatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  11938462 tatactccacataattttaaattaattaaataaataactagggcgttaca 11938511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 44656564 - 44656513
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  ||| |||||||||||||| ||||||||||||||    
T  44656564 atatatactccacataatccaaa-ttaattaaataaataactagggcgttaca 44656513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 44662483 - 44662432
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  ||| |||||||||||||| ||||||||||||||    
T  44662483 atatatactccacataatccaaa-ttaattaaataaataactagggcgttaca 44662432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 10383262 - 10383314
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10383262 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 10383314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 10424053 - 10424105
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10424053 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 10424105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 14843974 - 14843921
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14843974 atatatactccacatagtttaaaattaattaaataaataactagggcgttacag 14843921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 3109798 - 3109850
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3109798 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 3109850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 23825636 - 23825584
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23825636 atatatactccacatagtttaaaattaattaaataaatcaccagggcgttaca 23825584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 43722900 - 43722845
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacagca 99  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  43722900 atatatactccacatagtttaaaattaattaaataaataattagggcgttacagca 43722845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 14951648 - 14951700
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  14951648 atatatactccacatagtttcaaattaattaaataaataactagggcgttaca 14951700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 16413111 - 16413059
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  16413111 atatatactccacatagtttcaaattaattaaataaataactagggcgttaca 16413059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 50654822 - 50654770
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  50654822 atatatactccacatagtttaaaat-aattaaataaataactagggcgttacag 50654770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 29494875 - 29494927
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||    
T  29494875 atatatactcctcatggttaaaaattaattaaataaataactagggcgttaca 29494927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 588 - 640
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  588 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 391 - 443
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  391 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 29056 - 29004
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29056 atatatactccacatagtttaaaattaattaaataaatcactagagcgttaca 29004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 8196033 - 8195981
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8196033 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 8195981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 8212736 - 8212684
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8212736 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 8212684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 12398672 - 12398619
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  12398672 atatatactcaacatagtttaaaattaattaaataaataactagggcgttacag 12398619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 12757031 - 12756979
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  12757031 atatatactccacatagtttaaaattaattaaataaataattagggcgttaca 12756979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 751180 - 751234
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacagc 98  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  751180 atatatgctccacatagtataaaattaattaaataaataactagggcgttacagc 751234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 40921730 - 40921679
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  40921730 atatatactccacatagtttaaaa-taattaaataaataactagggcgttaca 40921679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 48986755 - 48986703
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  48986755 atatatgctccacatagtataaaattaattaaataaataactagggcgttaca 48986703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 5186066 - 5186014
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  5186066 atatatactccacatagtataaaattaattaaat-aataactagggcgttacag 5186014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 40683596 - 40683544
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||| ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  40683596 atatatgctccacatagtataaaattaattaaataaataattagggcgttaca 40683544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 49151944 - 49151994
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  ||||| |||||||||||| ||||||||||||||    
T  49151944 atatatactccacataat--aaaatcaattaaataaataactagggcgttaca 49151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 49158632 - 49158682
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  ||||| |||||||||||| ||||||||||||||    
T  49158632 atatatactccacataat--aaaatcaattaaataaataactagggcgttaca 49158682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 13595962 - 13596013
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||    
T  13595962 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttaca 13596013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 1110496 - 1110444
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1110496 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 1110444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 22247047 - 22246995
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  22247047 atatatactccacatagttaaaaattaattaaataaataactagggcgttaca 22246995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 38014995 - 38015046
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  38014995 atatatactccacatagtttaaaa-taattaaataaataactagggcgttaca 38015046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 24009315 - 24009392
Alignment:
Q  20 aatcacaaaacatcatatacactaatatata--ctccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||| |||||||||||| | |||||||||  |||||||||||| ||| |||||||||||||  ||||||||||||||    
T  24009315 aatcaccaaacatcatatataataatatatatactccacatagttcaaa-ttaattaaataaacaactagggcgttaca 24009392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 15462764 - 15462834
Alignment:
Q  27 aaacatcatatacactaata--tatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||| | |||||  ||||||||||||| || ||| |||||||||||||| ||||||||||||||    
T  15462764 aaacatcatatataataatacatatactccacataattcaaa-ttaattaaataaataactagggcgttaca 15462834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 10687430 - 10687482
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||| || ||| |||||||||||||  |||||||||||||||    
T  10687430 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttacag 10687482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 40009798 - 40009747
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||    
T  40009798 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttaca 40009747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 18979638 - 18979690
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18979638 atatatactccacatagtttaaaattaattaaataaataactagggcgttaca 18979690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 11359032 - 11358980
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  11359032 atatatactccacatagtttcaaattaattaaataaataactagggcgttaca 11358980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 36983355 - 36983303
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  36983355 atatatactccacatagattaaaattaattaaataaataactagggcgttaca 36983303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 21606095 - 21606146
Alignment:
Q  46 atatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  21606095 atatactccacatactttaaaattaattaaataaataactagggcgttacag 21606146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 20938918 - 20938971
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  20938918 atatatactccacataattttaaattaattaaataaataactagggcgttacag 20938971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 24480419 - 24480368
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  24480419 atatatactccacatagtttaaaa-taattaaataaataactagggcgttaca 24480368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 35586736 - 35586788
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  35586736 atatacactccacatagtttaaaat-aattaaataaataactagggcgttacag 35586788  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 42553119 - 42553163
Alignment:
Q  52 tccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||    
T  42553119 tccacatagtataaaattaattaaataaataactagggcgttaca 42553163  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 23887166 - 23887116
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||||||||||    
T  23887166 atatatactccacataat--aaaattaattaaataaataactagggcgttaca 23887116  T

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Target: scaffold0072 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 62848 - 62796
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  62848 atatatactccacatagtataaaattaattaaataaataactagggcgttaca 62796  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 31534078 - 31534026
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  31534078 atatatactccacatagtataaaattaattaaataaataactagggcgttaca 31534026  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 31550871 - 31550819
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  31550871 atatatactccacatagtataaaattaattaaataaataactagggcgttaca 31550819  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 52400180 - 52400232
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  52400180 atatatactccacatagtttaaaattaattaaataaataattagggcgttaca 52400232  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 26722523 - 26722471
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  26722523 atatatactccatatagtttcaaattaattaaataaataactagggcgttaca 26722471  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 38906841 - 38906766
Alignment:
Q  20 aatcacaaaacatcatatacactaatatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||| |||||||||||| |  ||||||||||||||||| || ||| |||||||||||||| ||||||||||||||    
T  38906841 aatcactaaacatcatatataaaaatatatactccacataattcaaa-ttaattaaataaataactagggcgttaca 38906766  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 37676748 - 37676797
Alignment:
Q  47 tatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  37676748 tatactccacataattttaaattaattaaataaataactagggcgttaca 37676797  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 37683419 - 37683468
Alignment:
Q  47 tatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  37683419 tatactccacataattttaaattaattaaataaataactagggcgttaca 37683468  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 18419436 - 18419513
Alignment:
Q  20 aatcacaaaacatcatatacactaatatata--ctccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||| |||||||||||| | |||||||||  |||||||||||| ||| ||||||||||| |  ||||||||||||||    
T  18419436 aatcaccaaacatcatatataataatatatatactccacatagttcaaa-ttaattaaatagacaactagggcgttaca 18419513  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 36210692 - 36210640
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttacag 97  Q
    |||||||||||||||| || ||| |||||||||||||  |||||||||||||||    
T  36210692 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttacag 36210640  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 1525658 - 1525607
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||    
T  1525658 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttaca 1525607  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 12203966 - 12204017
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||    
T  12203966 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttaca 12204017  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 36210803 - 36210752
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||    
T  36210803 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttaca 36210752  T

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Target: scaffold0430 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 14832 - 14780
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  14832 atatatactccacataattttaaattaattaaataaataactagggcgttaca 14780  T

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Target: scaffold0276 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 20901 - 20849
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  20901 atatatactccacgtagtataaaattaattaaataaataactagggcgttaca 20849  T

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Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 51365 - 51416
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  51365 atatatactccacatagtttaaaa-taattaaataaataactagggcgttaca 51416  T

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Target: scaffold0137 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 25167 - 25115
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||||||    
T  25167 atatatactccacataaattcaaattaattaaataaataactagggcgttaca 25115  T

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Target: scaffold0089 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 17333 - 17282
Alignment:
Q  44 atatatactccacatagtttaaaattaattaaataaatcactagggcgttaca 96  Q
    |||||||||||||||| || ||| |||||||||||||  ||||||||||||||    
T  17333 atatatactccacataattcaaa-ttaattaaataaacaactagggcgttaca 17282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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