View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_70 (Length: 292)
Name: NF15932_high_70
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 7242504 - 7242779
Alignment:
| Q |
1 |
tctgttttgtctaaggtaatggcgaaaccaccgagaaggacaacagtcgcccatataaaaccaagagttcccaaaccagttgctgctttttcaagcacgg |
100 |
Q |
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| T |
7242504 |
tctgttttgtctaaggtaatggcgaaaccaccgagaaggacaacagtcgcccatataaaaccaagagttcccaaaccagttgctgctttttcaagcacgg |
7242603 |
T |
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| Q |
101 |
caaggcgcagagcaaagagagtaagtttcttttccggtgctctaactgttgttgaagactcattagaatcttctttatcaccttcaccactatctctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7242604 |
caaggcgcagagcaaagagagtaagtttcttttccggtgctctaactgttgttgaagactcattagaatcttctttatcaccttcaccactatctctctt |
7242703 |
T |
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| Q |
201 |
ctctagactgctaaggccacgacgaggctcaaacattgtggcgcatttgcttgttgtctcgcttagcctcctaagt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7242704 |
ctctagactgctaaggccacgacgaggctcaaacattgtggcgcatttgctcgttgtctcgcttagcctcctaagt |
7242779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 48730629 - 48730497
Alignment:
| Q |
22 |
gcgaaaccaccgagaaggacaacagtcgcccatataaaaccaagagttcccaaaccagttgctgctttttcaagcacggcaaggcgcagagcaaagagag |
121 |
Q |
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||||||||||| |||||||||||||| ||||| || |||| ||||||||| || || |||| ||||||||||||||| ||||| | |||||||| || | |
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| T |
48730629 |
gcgaaaccaccaagaaggacaacagtggcccagatgaaactaagagttcctaaccctgttgatgctttttcaagcactgcaagctgaagagcaaaaaggg |
48730530 |
T |
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| Q |
122 |
taagtttcttttccggtgctctaactgttgttg |
154 |
Q |
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| T |
48730529 |
tcagtttcttttctggtgctatatttgttgttg |
48730497 |
T |
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