View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_74 (Length: 288)
Name: NF15932_high_74
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_74 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 42060773 - 42060510
Alignment:
| Q |
16 |
caatatctatatgacaaggtccaaaagtaaaataggaatnnnnnnntaagaagaccaaataaagtaataaacaatctaatgagaagctcgtgaagttaaa |
115 |
Q |
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| T |
42060773 |
caatatctatatgacaaggtccaaaagtaaaataggaataaaaaaataagaagaccaaataaagtaataaacaatctaatgagaagctcgtgaagttaaa |
42060674 |
T |
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| Q |
116 |
tcccatgttatttaattgctaacaacgttattctttctttgaaatccagtaattagcctaagataatgacgtacgtatttatcttagctggtttaaga-- |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060673 |
tcccatgttatttaattgctaacaacgttattctttctttgaaatccagtaattagcctaagataatgacgtacgtatttatcttagctggtttaagata |
42060574 |
T |
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| Q |
214 |
-tagaactaatagagtatcctttattgcttcattgaaaaagtcaaatttaatctatgctctctg |
276 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42060573 |
gtagaactaatagagtatcctttattgcttcattggaaaagtcaaatttaatctatgctctctg |
42060510 |
T |
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