View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_77 (Length: 285)

Name: NF15932_high_77
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_77
NF15932_high_77
[»] chr8 (8 HSPs)
chr8 (20-245)||(17855008-17855234)
chr8 (20-212)||(17846131-17846321)
chr8 (24-95)||(17821216-17821287)
chr8 (20-95)||(17923372-17923447)
chr8 (20-95)||(17870523-17870598)
chr8 (20-93)||(17802371-17802444)
chr8 (20-92)||(17718275-17718347)
chr8 (20-94)||(17692931-17693005)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 17855008 - 17855234
Alignment:
Q  20 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttgtagagnnnnnnnnctaaatacaca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  17855008 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttgtagagaaaaaaaactaaatacaca 17855107  T
Q  120 ataatagaaagaaagaaacagcagacccaacaaataaggaaagttttatgat---atgatggtttatgaaaccacacacgacttaaatagaaatttttta 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||  ||||||||||||||||||| ||||||    
T  17855108 ataatagaaagaaagaaatagcagacccaacaaataaggaaagttttatgatatgatgatggtttatgaaac--cacacgacttaaatagaaaattttta 17855205  T
Q  217 ctatgcagtagacccaacaaattaaatta 245  Q
    |||||||||||||||||||||||||||||    
T  17855206 ctatgcagtagacccaacaaattaaatta 17855234  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 17846131 - 17846321
Alignment:
Q  20 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg--tagagnnnnnnnnctaaataca 117  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | |||||||||||||   |||         |||||||||    
T  17846131 aatagtttgaagaacttctcccctggtgctttaatcccaagttcagtgataagtttaccaacgagcaccatttttggaaagaaaaaaaaaactaaataca 17846230  T
Q  118 caataatagaaagaaagaaacagcagacccaacaaataaggaaagttttatgatatgatggtttatgaaaccacacacgacttaaatagaaattt 212  Q
    |||||||||||||||||| |    |||  ||  |||||||| | |||||||||||||||||||||||||||  |||| | |||||||||||||||    
T  17846231 caataatagaaagaaagagaagaaagaaaca--aaataagggatgttttatgatatgatggtttatgaaac--cacatgccttaaatagaaattt 17846321  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 17821216 - 17821287
Alignment:
Q  24 gtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg 95  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  17821216 gtttgaagaacttctcccctggtgctttaatcccaagttcagtgataagtttaccagctagcaccatttttg 17821287  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 17923372 - 17923447
Alignment:
Q  20 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg 95  Q
    ||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17923372 aatagttggaagaacttctcaccgggtgttttgatcccaagttcagtgataagtttaccagcaagcaccatttttg 17923447  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 17870523 - 17870598
Alignment:
Q  20 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg 95  Q
    ||||||||||||||||| ||  |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  17870523 aatagtttgaagaacttttcagctggtgttttgatcccaagttcagtaataagtttaccagcaagcaccatttttg 17870598  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 17802371 - 17802444
Alignment:
Q  20 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttt 93  Q
    ||||||||||||||| | ||  | |||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  17802371 aatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtcataagtttaccagcaagcaccatttt 17802444  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 17718275 - 17718347
Alignment:
Q  20 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccattt 92  Q
    ||||||||||||||||| ||  | |||| ||||||||||||||||||  |||||||||| || ||||||||||    
T  17718275 aatagtttgaagaacttgtcgacgggtgttttgatcccaagttcagtactaagtttaccggcgagcaccattt 17718347  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 17692931 - 17693005
Alignment:
Q  20 aatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccattttt 94  Q
    ||||||||||||||||| ||    | || ||||||||||| ||||||  ||||||||||||||||||||||||||    
T  17692931 aatagtttgaagaacttgtcagaggatgctttgatcccaatttcagtactaagtttaccagcaagcaccattttt 17693005  T

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