View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_high_79 (Length: 284)

Name: NF15932_high_79
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_high_79
NF15932_high_79
[»] chr3 (2 HSPs)
chr3 (16-267)||(290759-291008)
chr3 (214-257)||(8354509-8354552)
[»] chr2 (4 HSPs)
chr2 (101-250)||(24525875-24526032)
chr2 (101-250)||(24532546-24532703)
chr2 (16-77)||(24525811-24525872)
chr2 (16-77)||(24532482-24532543)
[»] chr5 (1 HSPs)
chr5 (214-257)||(14460511-14460554)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 290759 - 291008
Alignment:
Q  16 atgatgacaccgttatctttaagaaaaataattagaaaaatgtagacaccttaatatggaatgtagttagcaatcaatcactatgtatgtatgctaccaa 115  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||    
T  290759 atgatgacaccgttatctttaagaaaaataattagagaaatgtagacaccttaatatcgaat--agttagcaatcaatcactatgtatgtatgttaccaa 290856  T
Q  116 tcaatcattaacaatatatatatcttccatgtggttgcccatttgactatccataaagtttctaacttctttcatcatttgcactcg--acacgcaacaa 213  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||    
T  290857 tcaatcattaacaatat--atatcttccatgtggtttcccatttgactatccataaagtttctaacttctttcttcatttgcactcgccacacgcaataa 290954  T
Q  214 taatgctaacttcaaaagtaagtgcatcattggataagcaatattctgtctagt 267  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  290955 taatgctagcttcaaaagtaagtgcatcattggataagcaatattctatctagt 291008  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 8354509 - 8354552
Alignment:
Q  214 taatgctaacttcaaaagtaagtgcatcattggataagcaatat 257  Q
    ||||||||||||||||||||| | || |||||||||||||||||    
T  8354509 taatgctaacttcaaaagtaaatacaccattggataagcaatat 8354552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 24525875 - 24526032
Alignment:
Q  101 tatgtatgctaccaatcaatcattaacaatatatatatcttccatgtggttgcccatttgactatccataaagtttcta--------acttctttcatca 192  Q
    |||||||| || |||||  |||||||||||||||||  ||||||| ||||||| ||||||||||||||||| |||||||        |||||||||||||    
T  24525875 tatgtatgttatcaatccgtcattaacaatatatat--cttccatatggttgcgcatttgactatccataacgtttctagtagaaaaacttctttcatca 24525972  T
Q  193 tttgcactcgacac--gcaacaataatgctaacttcaaaagtaagtgcatcattggataa 250  Q
    |||||||||| |||  ||||||||||||||| ||||||||||||||||| ||||||||||    
T  24525973 tttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataa 24526032  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 24532546 - 24532703
Alignment:
Q  101 tatgtatgctaccaatcaatcattaacaatatatatatcttccatgtggttgcccatttgactatccataaagtttct--------aacttctttcatca 192  Q
    |||||||| || ||||| ||||||||||||||  ||||||||||| ||||||| ||||||||||||||||| ||||||        ||||||||||||||    
T  24532546 tatgtatgttatcaatccatcattaacaatat--atatcttccatatggttgcacatttgactatccataacgtttctagtagagaaacttctttcatca 24532643  T
Q  193 tttgcactcg--acacgcaacaataatgctaacttcaaaagtaagtgcatcattggataa 250  Q
    ||||||||||  ||| ||||||||||||||| |||||||| |||||||  ||||||||||    
T  24532644 tttgcactcgccacaagcaacaataatgctagcttcaaaactaagtgcgacattggataa 24532703  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 24525811 - 24525872
Alignment:
Q  16 atgatgacaccgttatctttaagaaaaataattagaaaaatgtagacaccttaatatggaat 77  Q
    ||||||||||| |||| | || | |||||||||||| |||||||||||||||||||| ||||    
T  24525811 atgatgacaccattatgtctatgcaaaataattagagaaatgtagacaccttaatatcgaat 24525872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 24532482 - 24532543
Alignment:
Q  16 atgatgacaccgttatctttaagaaaaataattagaaaaatgtagacaccttaatatggaat 77  Q
    ||||||||||| |||| | || | |||| ||||||| |||||||||||||||||||| ||||    
T  24532482 atgatgacaccattatgtctatgcaaaacaattagagaaatgtagacaccttaatatcgaat 24532543  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 14460511 - 14460554
Alignment:
Q  214 taatgctaacttcaaaagtaagtgcatcattggataagcaatat 257  Q
    ||||||||||||||||||||| | || |||||||||||||||||    
T  14460511 taatgctaacttcaaaagtaaatacaccattggataagcaatat 14460554  T

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