View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_high_93 (Length: 249)
Name: NF15932_high_93
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_93 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 7242409 - 7242166
Alignment:
| Q |
1 |
attactgagtcaggaatgcatagttttcagatgctgagatcaagttcaaattccattcttcaaagtataaagaatctttgcggacctattaatgccgccg |
100 |
Q |
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| T |
7242409 |
attactgagtcaggaatgcatagttttcggatgctgagatcaagttcaaattccattcttcaaagtataaagaatctttgcagacctattaatgccgccg |
7242310 |
T |
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| Q |
101 |
taaagaagcacagaaaagacaccgtggaggctaatgtcattgtaccgaggtttttggataacagaatcacaaggacaacgactaggacgtggattagttc |
200 |
Q |
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| T |
7242309 |
taaagaagcacagaaaagacaccgtggaggctaatgtcattgtaccgaggtttttggataacagaatcacaaggacaacgactaggacgtggattagttc |
7242210 |
T |
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| Q |
201 |
agacgttccacttttaccatatgctaaatggtttttcatttcag |
244 |
Q |
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| T |
7242209 |
agacgttccacttttaccatatgctaaatggtttttcatttcag |
7242166 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 48730825 - 48730891
Alignment:
| Q |
170 |
caaggacaacgactaggacgtggattagttcagacgttccacttttaccatatgctaaatggttttt |
236 |
Q |
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| T |
48730825 |
caaggacaccaactaggatgtgggttagctcagaagttccattattaccttatgctaaatggttttt |
48730891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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