View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_high_94 (Length: 249)
Name: NF15932_high_94
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_high_94 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 45273749 - 45273516
Alignment:
| Q |
16 |
atcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgctgctaggagggtcaagtggaggggttatcacggtgtcattagcag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45273749 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45273650 |
T |
|
| Q |
116 |
ggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
215 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273649 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
45273550 |
T |
|
| Q |
216 |
ttcaaagcttgaaaattaaactaatgtttctatt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45273549 |
ttcaaagcttgaaaattaaactaatgtttctatt |
45273516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 45281993 - 45281773
Alignment:
| Q |
16 |
atcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgctgctaggagggtcaagtggaggggttatcacggtgtcattagcag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45281993 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45281894 |
T |
|
| Q |
116 |
ggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
215 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45281893 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
45281794 |
T |
|
| Q |
216 |
ttcaaagcttgaaaattaaac |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45281793 |
ttcaaagcttgaaaattaaac |
45281773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 45293328 - 45293113
Alignment:
| Q |
21 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgctgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
45293328 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45293229 |
T |
|
| Q |
121 |
aggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
220 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||||||||||| |
|
|
| T |
45293228 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45293129 |
T |
|
| Q |
221 |
agcttgaaaattaaac |
236 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45293128 |
agcttgaaaattaaac |
45293113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 45302288 - 45302073
Alignment:
| Q |
21 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgctgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
45302288 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45302189 |
T |
|
| Q |
121 |
aggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
220 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||||||||||| |
|
|
| T |
45302188 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45302089 |
T |
|
| Q |
221 |
agcttgaaaattaaac |
236 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45302088 |
agcttgaaaattaaac |
45302073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 45270194 - 45269954
Alignment:
| Q |
21 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgctgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
120 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| | ||||||||||||||| || |
|
|
| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
|
| Q |
121 |
aggctaccaaattcaccgctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
208 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
|
|
| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
45269995 |
T |
|
| Q |
209 |
ccttggcttcaaagcttgaaaattaaactaatgtttctatt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269994 |
ccttggcttcaaagcttgaaaattaaactaatgtttctatt |
45269954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University