View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_10 (Length: 578)
Name: NF15932_low_10
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 28758769 - 28759328
Alignment:
| Q |
1 |
aaacacaagcaaatcttttctaccatttccacaacaaagcttcataacaatattataactcaaagaatcaggcacaacaccaaacctcggcatttcatca |
100 |
Q |
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| T |
28758769 |
aaacacaagcaaatcttttctaccatttccacaacaaagcttcataacaatattataactcaaagaatcaggcacaacaccaaaccccggcatttcatca |
28758868 |
T |
|
| Q |
101 |
aacacttgtaaaaacatcttaccatcacccaaattagcacaagcattaagcacagcattgaacgccacagtatccggcggcgacattgcggtgatttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||| |
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| T |
28758869 |
aacacttgtaaaaacatcttaccatcacccaaattagcacaagcattaagcacagcattgaacgccacagtatccggccgcgactccgccgccatttcaa |
28758968 |
T |
|
| Q |
201 |
ggtcaggcagattcctaatatggcgcgtgccagcattaaagagacggatagcttcagccggaccagaagcatcatcgtcggaggcgatacggcttacgac |
300 |
Q |
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| T |
28758969 |
ggtcagggagcttcctaagccggcgcgtgacagcacgaaagagacggatagcttcagccggaccagaagcatcatcgtcggaggcgagacggcttacgac |
28759068 |
T |
|
| Q |
301 |
agcactccaagctttgacatgaggaatgtagccggagcggagcatggatttgacaacggaggaagcgtagatagtgtgaccagctttagcagcggcgacg |
400 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28759069 |
agcactccaagctttgacatgaggaaggtagccggagcggagcatggatttgacaacggaggaagcgtagatagtgtgaccagctttagcagaggcgacg |
28759168 |
T |
|
| Q |
401 |
gcaaggaggccgagggaattggagtcgagacggtggagctgggattcattacggaggcgcgtgaggatggactgagcgcgcgtgagagaagagggagtgt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28759169 |
gcaaggaggccgagggaattggagtcgagacggtggagctgggattcattacggaggcgcgtgaggatggactgagcacgcgtgagagaagagggagtgt |
28759268 |
T |
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| Q |
501 |
tgttgtaagaaagctgagagactaaacggctgaggcaagtggggttagggaggtgagggg |
560 |
Q |
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| T |
28759269 |
tgttgtaagaaagctgagagagtaaacggctgaggcaagtggggttagggaggtgagggg |
28759328 |
T |
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