View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_low_104 (Length: 240)
Name: NF15932_low_104
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_104 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 36845463 - 36845678
Alignment:
| Q |
7 |
aaaacttcacaccttcagcagagcacttaataacctgtggcaaaaattccaaagagattatagccacctttccttgaacataaccacagatgctcccatt |
106 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36845463 |
aaaactttacaccttcagcataacacttaataacctgtggcaaaaattccaaagagattatagccacctttccttgaacataaccacagatgctcccatt |
36845562 |
T |
|
| Q |
107 |
atcaacccttgcactcatccaaaattcttttacaagctcggtatagataggtttcttttctgcacagaagtattccatccaacccatatcctcaaaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36845563 |
atcaacccttgcactcatccaaaattcttttacaagctcggtgtagataggtttcttttctgcacagaagtattccatccaacccatatccacaaaattt |
36845662 |
T |
|
| Q |
207 |
tctccgaagtcaaatt |
222 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
36845663 |
tctctgaagtcaaatt |
36845678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 18931155 - 18931343
Alignment:
| Q |
7 |
aaaacttcacaccttcagcagagcacttaataacctgtggcaaaaattccaaagagattatagccacctttccttgaacataaccacagatgctcccatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18931155 |
aaaacttcacaccttcagcatagcacttaataacctgtggcaaaaattccaaagagattataaccacctttccttgaacataaccatagatgctcccatt |
18931254 |
T |
|
| Q |
107 |
atcaacccttgcactcatccaaaattcttttacaagctcggtatagataggtttcttttctgcacagaagtattccatccaacccatat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
18931255 |
atcaacccttgcactcatccaaaattcttttacaagctcggtgtagataggtttcttttctgcatagaaatattccatccaacccatat |
18931343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University