View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_11 (Length: 543)
Name: NF15932_low_11
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 136 - 527
Target Start/End: Original strand, 37553259 - 37553650
Alignment:
| Q |
136 |
ggagtaagtgtggtttacataaatatgaacattgtaacataaagagtggtgatgtattgaatacaatttttcattcaataattttcacatctactctata |
235 |
Q |
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| T |
37553259 |
ggagtaagtgtggtttacataaatatgaacattgtaacataaagagtggtgatgtattgaatacaatttttcattcaataattttcacatctactctata |
37553358 |
T |
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| Q |
236 |
ttcaaattgtatttctttctcccccattaaattgtagagatagaatattaatcacgggtatgattaacatcatttagaaaaattatgatactnnnnnnng |
335 |
Q |
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| T |
37553359 |
ttcaaattgtatttctttctcccccattaaattgtagagatagaatattaatcacgggtatgattaacatcatttagaaaaattatgatattaaagaaag |
37553458 |
T |
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| Q |
336 |
aatgtaggcatagtctgcaaacataagtgaagcccaattaagaattatagcccaaaggaaatttnnnnnnnnnnnnnnnngaggtcggcataaataatga |
435 |
Q |
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| T |
37553459 |
aatgtaggcatagtctgcaaacataagtgaagcccaattaagaattatagcccaaaggaaattttaaaaaaataaaaaaagaggtcggcataaataatga |
37553558 |
T |
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| Q |
436 |
gaaacacatgaacaaacgagtgaaaaaggacatactgactgacggtctagaacctctccttattatctttgatcattggttcatgaatgaag |
527 |
Q |
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| T |
37553559 |
gaaacacatgaacaaacgagtgaaaaaggacatactgactgacggtctagaacctctccttattatctttgatcattggttcatgaatgaag |
37553650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 37553137 - 37553229
Alignment:
| Q |
10 |
aacaatatgtgttggtttgagactttgaagtctccttctcttaaggtctgaggctcaactttccctgaagccaatttcagtggactaatttga |
102 |
Q |
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| T |
37553137 |
aacaatatgtgttggtttgagactttgaagtctccttctctcaaggtctgaggctcaactctccctgaagccaatttcagtagactaatttga |
37553229 |
T |
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