View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_117 (Length: 221)
Name: NF15932_low_117
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_117 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 19826250 - 19826062
Alignment:
| Q |
16 |
attggaagccctccatcaaaagctacttgagaaccagcaggtatgactgattttgcattgcatgatacaaccccgtggatattttccatcgcagataaaa |
115 |
Q |
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| T |
19826250 |
attggaagcgctccatcaaaagctacttgagaaccagcaggtatgactgattttgcattgcatgatacaaccccgtggatattttccatcgcagataaaa |
19826151 |
T |
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| Q |
116 |
gggtgtctgcattaatatgtgtcaaattcttcaaaattgaagattttgatgcaattagctgcatttgatgtttgaatgatctccagtat |
204 |
Q |
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| T |
19826150 |
gggtgtctgcattaatatgtgtcaaattcttcaaaattgaagattttgatgcaattagctgcatttgatgtttgaatgatctccagtat |
19826062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 64 - 204
Target Start/End: Complemental strand, 37642809 - 37642669
Alignment:
| Q |
64 |
gattttgcattgcatgatacaaccccgtggatattttccatcgcagataaaagggtgtctgcattaatatgtgtcaaattcttcaaaattgaagattttg |
163 |
Q |
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| T |
37642809 |
gattttgtattgcatgatacaaccccgtgaatattttccatcaaagataaaagggtgtctgcagtaatatgtttcaaattcttcaaaattgaagattttg |
37642710 |
T |
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| Q |
164 |
atgcaattagctgcatttgatgtttgaatgatctccagtat |
204 |
Q |
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| T |
37642709 |
atgcaattagctgcatttgatgattgaatgatccccagtat |
37642669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 6381458 - 6381341
Alignment:
| Q |
79 |
gatacaaccccgtggatattttccatcgcagataaaagggtgtctgcattaatatgtgtcaaattcttcaaaattgaagattttgatgcaattagctgca |
178 |
Q |
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||||||| || |||||||||||||||| |||||||||||| | |||||||||||| |||||||| ||||| |||||||||||||| || |||||| |
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| T |
6381458 |
gatacaatcctgtggatattttccatcaaagataaaagggtttatgcattaatatgcttcaaattcctcaaacatgaagattttgatggaagcggctgca |
6381359 |
T |
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| Q |
179 |
tttgatgtttgaatgatc |
196 |
Q |
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| T |
6381358 |
tttgatgattgaaagatc |
6381341 |
T |
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