View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_12 (Length: 536)
Name: NF15932_low_12
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Complemental strand, 31993155 - 31992645
Alignment:
| Q |
15 |
agattctacaacattgtagcacataggtgcaaatgttatgaccaagtcttagaagattgaaacctttgaaaggttgaggagcaatatgagttaaggaaaa |
114 |
Q |
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| T |
31993155 |
agattctacaacattgtagcacataggtgcaaatgttatgaccaagtcttagaagattgaaacctttgaaaggttgaggagcaatatgagttaaggaaga |
31993056 |
T |
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| Q |
115 |
gttttagggttagttaattcatagtttgagttagctaggcagttttaaaagttagttagaaggtgttagttggattgctcccttgtcaagtaatcaagtg |
214 |
Q |
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| T |
31993055 |
gttttagggttagttaattcatagtttgagttagctaggcagttttaaaagttagttagaaggtgttagttggattgctcccttgtcaagtaatcaagtg |
31992956 |
T |
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| Q |
215 |
aagaatatgtacttgtataattgattcctatgtcattgtgtgcatgcaaatcctaaattgtaaatcattttcgacattcaatagaaagtacttttctccc |
314 |
Q |
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| T |
31992955 |
aagaatatgtacttgtataattgattcctatgtcattgtgtgcatgcaaatcctaaattgtaaatcattttcgacattcaatagaaagtacttttctccc |
31992856 |
T |
|
| Q |
315 |
aaatttcttgttcagttctcattcatattttcacaaaacctcattgctacattgttctaacacatatagcaaaacctttagaagactaaagagaatttca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31992855 |
aaatttcttgttcagttctcattcatattttcacaaaacctcattgctacattgttctaacacatatagcaaaaccttgagaagactaaagagaatttca |
31992756 |
T |
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| Q |
415 |
tgattcattgcaagaatattgtcaacgttgacatatatcgttatattatcatttatcacatataatgttatattgcatgcaagtataatattaacattga |
514 |
Q |
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| T |
31992755 |
tgattcattgcaagaatattgtcaacattgacatatatcgttatattatcatttatcacatataatgttatattacatgcaagtataatattaacattga |
31992656 |
T |
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| Q |
515 |
aatcatttcat |
525 |
Q |
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| T |
31992655 |
aatcatttcat |
31992645 |
T |
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