View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_127 (Length: 205)
Name: NF15932_low_127
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_127 |
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| [»] scaffold0632 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 36486053 - 36486219
Alignment:
| Q |
18 |
atcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36486053 |
atcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatata |
36486152 |
T |
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| Q |
118 |
tcttcatgaaaatggactagaacaaaaagaacaagaaagtgaagagtttgtagatgatatgtgttgg |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36486153 |
tcttcatgaaaatggactagaacaaaaagaacaagaaagtgaagagtttgtagatgatatgtgttgg |
36486219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 28539405 - 28539571
Alignment:
| Q |
18 |
atcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatata |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28539405 |
atcttcttcactcatgtttcaagatcttttttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatata |
28539504 |
T |
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| Q |
118 |
tcttcatgaaaatggactagaacaaaaagaacaagaaagtgaagagtttgtagatgatatgtgttgg |
184 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28539505 |
tcttcatgaaaatggactagaataaaaagaacaagaaagtgaagagtttgtagatgatatgtgttgg |
28539571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 31600329 - 31600163
Alignment:
| Q |
18 |
atcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31600329 |
atcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttacagaacgtttgatcagttatatagtatata |
31600230 |
T |
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| Q |
118 |
tcttcatgaaaatggactagaacaaaaagaacaagaaagtgaagagtttgtagatgatatgtgttgg |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31600229 |
tcttcatgaaaatggactagaacaaaaagaacaagaaagtgaagagtttgtagatgatatgtgttgg |
31600163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 2552 - 2672
Alignment:
| Q |
18 |
atcttcttcactcatgtttcaaggtctttt-ttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatat |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2552 |
atcttcttcactcatgtttcaaggtctttttttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatat |
2651 |
T |
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| Q |
117 |
atcttcatgaaaatggactag |
137 |
Q |
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| T |
2652 |
atcttcatgaaaatggactag |
2672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 3002 - 3048
Alignment:
| Q |
138 |
aacaaaaagaacaagaaagtgaagagtttgtagatgatatgtgttgg |
184 |
Q |
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||||||| ||||||||||||||||| |||||||||| |||||||||| |
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| T |
3002 |
aacaaaatgaacaagaaagtgaagaatttgtagatggtatgtgttgg |
3048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 957025 - 957139
Alignment:
| Q |
19 |
tcttcttcactcatgtttcaaggtcttttttcatttattaattcatgagcttaatttcactacaacttacaaaacgtttgatcagttatatagtatatat |
118 |
Q |
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|||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |
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| T |
957025 |
tcttcttcactcctgtttcaaggtcttttttcgtttatt----catgagcttaatttcactacaacttacaaaaaatttgatcagttatctagtttatat |
957120 |
T |
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| Q |
119 |
cttcatgaaaatggactag |
137 |
Q |
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||||||||||||||||||| |
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| T |
957121 |
cttcatgaaaatggactag |
957139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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