View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_13 (Length: 529)
Name: NF15932_low_13
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 525
Target Start/End: Complemental strand, 40186247 - 40185743
Alignment:
| Q |
16 |
gaagaaggtatatagcagagatgggagaaggtagaccaaagaagaaaaacgacgagaagtcttaagaaaccttcaagacctggccatcgaaggaaccccc |
115 |
Q |
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| T |
40186247 |
gaagaaggtatatagcagagatgggagaaggtagaccaaagaagaaaaacgacgagaagtcttaagaaaccttcaagacctggccatcgaaggaaccccc |
40186148 |
T |
|
| Q |
116 |
aactctgacatggcatccatcgtgatgaaggataagtaatcaaaaaattgtacatcgcagatggcctcaagaagctcattactcaaaactcaaacttaac |
215 |
Q |
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| T |
40186147 |
aactctgacatggcatccatcgtgatgaaggataagtaatcaaaaaattgtacatcgcagatggcctcaagaagctcattactcaaaactcaaacttaac |
40186048 |
T |
|
| Q |
216 |
taattatggatgggataaagaagaaagaagaattatatgtgatgaatctgtaattcaaagtgttgcagagtgtgaaatgaatttctactttgtgactagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40186047 |
taattatggatgggataaagaagaaagaagaattatatgtgatgaatctgtaattcaaagtgttgcagagtgtgaaatgaatttctactttgtgactagt |
40185948 |
T |
|
| Q |
316 |
taaacagaactgtgtagttagttgggtagacttggtggttaagtttccacnnnnnnnnnnnnnnnnnggagatgtaccttttgtctatgcctacgcggtt |
415 |
Q |
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| T |
40185947 |
taaacagaactgtgtagttagttgggtagacttggtggttaagtttccacaaaaacaaaaagaaaaaggagatgtaccttttgtctatgcctacgcggtt |
40185848 |
T |
|
| Q |
416 |
tgactcttgcacttacatacagtacaaacttttttgtctttcgtttaggtcccaactcaagccaagtaacggattaaccaaccagtccaacaggataaat |
515 |
Q |
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| T |
40185847 |
tgactcttgtacttacatacagtacaaacttttttgtctttcgtttaggtcccaactcaagccaagtaacgaattaaccaa-----ccaacaggataaat |
40185753 |
T |
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| Q |
516 |
atgatttctt |
525 |
Q |
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|||||||||| |
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| T |
40185752 |
atgatttctt |
40185743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 40187504 - 40187305
Alignment:
| Q |
17 |
aagaaggtatatagcagagatgggagaaggtagaccaaagaagaaaaacgacgagaagtcttaagaaaccttcaagacctggccatcgaaggaaccccca |
116 |
Q |
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|||||||||| || |||| ||||||||||||||||||||||| ||||| || ||||||||| |||| | | ||||||||||||||||||||||||||| |
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| T |
40187504 |
aagaaggtatgtaacagaattgggagaaggtagaccaaagaaggaaaaccacaagaagtcttgagaattcgtgaagacctggccatcgaaggaaccccca |
40187405 |
T |
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| Q |
117 |
actctgacatggcatccatcgtgatgaaggataagtaatcaaaaaattgtacatcgcagatggcctcaagaagctcattactcaaaactcaaacttaact |
216 |
Q |
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|||||||||||||||||||||||| ||||||| |||| | ||| |||||| | ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
40187404 |
actctgacatggcatccatcgtgactaaggatatgtaaatacaaagttgtacgttgcagacggcctcacaaagctcattactcaaaactcaaacttaact |
40187305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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