View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_15 (Length: 525)
Name: NF15932_low_15
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 39378807 - 39379304
Alignment:
| Q |
13 |
aaaatcttgagttaatgacccattcaacaaattggaagacagatccaaaacttgtaaatttcgcaaatctttaggtagaaaaccagtgaagtaattgttc |
112 |
Q |
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| T |
39378807 |
aaaatcttgagttaatgacccgtttaacaaatttgaagacagatccaaaatttgtaaagttcgtaaatctttaggaagaaaaccagtgaagtaattgttc |
39378906 |
T |
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| Q |
113 |
ttaaacgaagctacggttaagttttgcatgtttgagagattgtttggtagttttccagtgaaagcattgtctgaaaagttaagaaactgaagatttctaa |
212 |
Q |
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| T |
39378907 |
ttaaacgaagctacggttaagttttgcatgtttgagaggttgtttggtagttttccagtgaaagcattgtctgaaaagttaagaaactgaagatttctaa |
39379006 |
T |
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| Q |
213 |
gctctgttaaagactctggaacttcacctgttaacaaattgttcgaaaaattaagaaaacgtagctcagaatttggctgaaaaaagtttgaagaaagaga |
312 |
Q |
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| T |
39379007 |
gctctgttaaagactctggaacttcacctgttaacaaattgttcgaaaaattaagaaaacatagctcagaatttggctgaaaaaagtttgaagaaagaga |
39379106 |
T |
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| Q |
313 |
cccattaatggaattattagaaagatcaagaatttgaaggtgttcaatggtagcaagatcagaaggaattgaactaacaagctgagaatttggtagtgat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39379107 |
cccattaatggaattattagaaagatcaagaatttgaaggtgttcaatggtaccaagatcagaaggaattgaactaacaagctgagaatttggtagtgat |
39379206 |
T |
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| Q |
413 |
aaaccagtaacacgaaacggtgtatcattgtttgtgtttggtgttattatggaacaagaaacaccgttccatgaacacggtgtttggtcgctgtaatt |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39379207 |
aaaccagtaacacgaaacggtgtatcattgtttgtgtttggtgttattatggaacaagaaacaccgttccatgaacatggtgtttggtcgctgtaatt |
39379304 |
T |
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