View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_16 (Length: 520)
Name: NF15932_low_16
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 19826061 - 19825551
Alignment:
| Q |
1 |
gatggcctacaaaagataacattcttcattaagattggctcaattaagtatttagacagttaacatcattgatgccgagtatatcagaat-aggttctta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
19826061 |
gatggcctacaaaagataacattcttcattaagattggctcaattaagtatttagacagttaacatcattgatgccaagtatatcagaattaggttctta |
19825962 |
T |
|
| Q |
100 |
catgtttcgatgaactaaggaaagaagccttgatgtcattttattttgaagaaaattcacaatgatctcaatagctagagttgtgtttttcctccgcatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19825961 |
catgtttcgatgaactaaggaaagaagccttgatgtcattttattttgaagaaaattcacaatgatctcaatagctagagttgtgtttttcctccgcatc |
19825862 |
T |
|
| Q |
200 |
acctccttctgctcggttgtcatttcattgattcttagatgctcatcgatatccatatcatgtgatatgcttaaccatcttggaagatgatctaataacc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
19825861 |
acctccttctgctcggttgtcatttcattgattcttacatgctcatcgatatccatatcatgtgatatgcttagccatcttgcaagatgatctaataacc |
19825762 |
T |
|
| Q |
300 |
cttcatcatccaaagttgcttcaagtaactgccttaaaattgagaaggcaaattcaacaagagcaactcccggttcccacacattgtggctgtattcttg |
399 |
Q |
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| T |
19825761 |
cttcatcatccaaagttgcttcaagtaactgccttaaaattgagaagacaaattcaacaagagcaactcccggttcacacacattgtggctgtattcttg |
19825662 |
T |
|
| Q |
400 |
cgaaagctgaagaacattatcaattgattccattgtcctgtgaaaccattggactagtagtgtttacaagtacagaaggaacatttcccatgcccaaaga |
499 |
Q |
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| T |
19825661 |
cgaaagctgaagaacattatcaattgattccattatcctgtgaaaccattggactagtagcgtttacaagtacagaaggaacatttcccatgcccaaaga |
19825562 |
T |
|
| Q |
500 |
gagagagacag |
510 |
Q |
| |
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||||||||||| |
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| T |
19825561 |
gagagagacag |
19825551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 28 - 507
Target Start/End: Complemental strand, 37642620 - 37642128
Alignment:
| Q |
28 |
attaagattggctcaattaagtatttagacagttaacatcattgatgccgagtatatcagaat-aggttcttacatgtttcgatgaactaaggaaagaag |
126 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
37642620 |
attaagattggctcaattaagtatttagacagtttacatcattgatgccaagtatatcagaattaggttcttacatgtttcgatgaactaagcaaagaag |
37642521 |
T |
|
| Q |
127 |
ccttgatgtcattttattttgaagaaaattcacaatgatctcaatagctagagttgtgtttttcctccgcatcacctccttctgctcggttgtcatttca |
226 |
Q |
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| T |
37642520 |
ccttgatgtcattttattttgtaaaagctgtacaatgatctcaatagctatcattgtgtttttcctctgcatcccctccttctgctcagttttcatttca |
37642421 |
T |
|
| Q |
227 |
ttgattcttagatgctcatcgatatccatatcatgtgatatgcttaaccatcttgg------------aagatgatctaataacccttcatcatccaaag |
314 |
Q |
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| T |
37642420 |
ttgatgcagtcatgctcagcaatatccatatcatgtgatctgcttagccatcttggcttattctctggaacatgatctaataacccttcatcatccaaaa |
37642321 |
T |
|
| Q |
315 |
ttgcttcaagtaactgccttaaaattgagaaggcaaattcaacaagagcaactcccggttcccacacattgtggctgtattcttgcgaaagctgaagaac |
414 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |
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| T |
37642320 |
ttgcttcaagtaactgccataaaattgagaagacaaattcaacaagagcaactcccggttcacacaccttgtggctgtatacttgcgaaagctgaagaac |
37642221 |
T |
|
| Q |
415 |
attatcaattgattccattgtcctgtgaaaccattggactagtagtgtttacaagtacagaaggaacatttcccatgcccaaagagagagaga |
507 |
Q |
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| T |
37642220 |
attatcaattgattccattatcctgtgaaaccattggattagcagtgtttacaaatacacaaggaacatttcccatccccaaaaagagagaga |
37642128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37642668 - 37642639
Alignment:
| Q |
1 |
gatggcctacaaaagataacattcttcatt |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37642668 |
gatggcctacaaaagataacattcttcatt |
37642639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 6381229 - 6381166
Alignment:
| Q |
109 |
atgaactaaggaaagaagccttgatgtcattttattttgaagaaaattcacaatgatctcaata |
172 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| | ||| | ||||||||||||||| |
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|
| T |
6381229 |
atgaactaaggaaagaagcctcgatgtcattttattttgcaaaaattgtacaatgatctcaata |
6381166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6381332 - 6381303
Alignment:
| Q |
1 |
gatggcctacaaaagataacattcttcatt |
30 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6381332 |
gatggcctacaaaagataacattcttcatt |
6381303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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