View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_low_17 (Length: 508)

Name: NF15932_low_17
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_low_17
NF15932_low_17
[»] chr4 (7 HSPs)
chr4 (13-316)||(48026214-48026517)
chr4 (321-489)||(48026004-48026172)
chr4 (326-426)||(39774909-39775009)
chr4 (334-458)||(45421600-45421724)
chr4 (321-487)||(18570239-18570404)
chr4 (336-460)||(21485534-21485658)
chr4 (334-374)||(25587933-25587973)
[»] chr3 (19 HSPs)
chr3 (13-320)||(52585738-52586043)
chr3 (13-316)||(53580990-53581288)
chr3 (13-264)||(20685106-20685357)
chr3 (8-256)||(4136080-4136335)
chr3 (325-489)||(20685459-20685623)
chr3 (321-489)||(52585532-52585700)
chr3 (16-190)||(8726591-8726765)
chr3 (16-190)||(9078478-9078652)
chr3 (321-485)||(53581330-53581494)
chr3 (131-267)||(39453222-39453357)
chr3 (321-484)||(39452972-39453133)
chr3 (334-460)||(42595590-42595716)
chr3 (334-460)||(17058749-17058875)
chr3 (321-382)||(25537476-25537537)
chr3 (334-413)||(13503320-13503399)
chr3 (329-450)||(8726934-8727054)
chr3 (329-450)||(9078821-9078941)
chr3 (325-416)||(43640497-43640588)
chr3 (356-489)||(3856593-3856726)
[»] chr8 (14 HSPs)
chr8 (13-316)||(10260130-10260431)
chr8 (323-489)||(17834284-17834450)
chr8 (321-489)||(10260473-10260640)
chr8 (11-268)||(8783234-8783507)
chr8 (13-148)||(9605189-9605324)
chr8 (326-483)||(8783609-8783766)
chr8 (321-436)||(8871815-8871930)
chr8 (13-68)||(16912601-16912656)
chr8 (321-426)||(9604921-9605025)
chr8 (322-413)||(13523129-13523220)
chr8 (278-320)||(17834490-17834532)
chr8 (334-413)||(13612664-13612743)
chr8 (334-382)||(4424673-4424721)
chr8 (278-314)||(9605069-9605105)
[»] chr2 (23 HSPs)
chr2 (13-320)||(18579630-18579935)
chr2 (13-316)||(5848834-5849135)
chr2 (13-320)||(15745669-15745974)
chr2 (33-268)||(33171059-33171292)
chr2 (321-489)||(18579420-18579592)
chr2 (321-460)||(5849177-5849315)
chr2 (321-465)||(15745484-15745631)
chr2 (23-190)||(36098514-36098679)
chr2 (334-458)||(3981721-3981845)
chr2 (321-457)||(36098844-36098980)
chr2 (321-403)||(19051619-19051701)
chr2 (321-403)||(33170891-33170972)
chr2 (323-395)||(30355294-30355365)
chr2 (8-48)||(40492515-40492555)
chr2 (13-68)||(5509817-5509872)
chr2 (8-47)||(19051327-19051366)
chr2 (334-413)||(22849524-22849603)
chr2 (356-458)||(10420976-10421078)
chr2 (103-203)||(19051364-19051463)
chr2 (334-460)||(19933865-19933991)
chr2 (322-395)||(26370455-26370528)
chr2 (278-314)||(30355418-30355454)
chr2 (282-318)||(33171011-33171047)
[»] chr5 (6 HSPs)
chr5 (13-319)||(17237551-17237859)
chr5 (20-260)||(32296028-32296264)
chr5 (321-489)||(17237344-17237512)
chr5 (321-489)||(32295765-32295932)
chr5 (321-489)||(20174605-20174773)
chr5 (46-150)||(20174318-20174425)
[»] chr7 (17 HSPs)
chr7 (13-269)||(13596622-13596874)
chr7 (13-320)||(23040168-23040473)
chr7 (13-268)||(48859144-48859398)
chr7 (13-320)||(22910874-22911179)
chr7 (13-268)||(26754585-26754834)
chr7 (321-489)||(23039961-23040130)
chr7 (321-460)||(26754922-26755061)
chr7 (321-460)||(13596962-13597101)
chr7 (321-488)||(15026403-15026566)
chr7 (321-489)||(22911217-22911385)
chr7 (321-489)||(48859486-48859654)
chr7 (321-416)||(23586238-23586334)
chr7 (408-478)||(47295175-47295245)
chr7 (334-413)||(21505015-21505094)
chr7 (134-199)||(26037039-26037104)
chr7 (321-416)||(26036787-26036882)
chr7 (325-373)||(28544168-28544216)
[»] chr1 (15 HSPs)
chr1 (13-268)||(44021895-44022144)
chr1 (17-268)||(32922779-32923030)
chr1 (15-268)||(30939765-30940018)
chr1 (321-489)||(42132081-42132248)
chr1 (13-251)||(43896137-43896374)
chr1 (321-452)||(44022232-44022363)
chr1 (47-190)||(39220664-39220807)
chr1 (174-316)||(42131899-42132039)
chr1 (321-447)||(32924095-32924221)
chr1 (13-70)||(42131785-42131842)
chr1 (323-388)||(12751083-12751148)
chr1 (110-196)||(26098264-26098350)
chr1 (334-458)||(47142682-47142806)
chr1 (321-416)||(27394627-27394722)
chr1 (373-426)||(26056348-26056401)
[»] chr6 (10 HSPs)
chr6 (95-320)||(15609892-15610115)
chr6 (116-268)||(5827373-5827525)
chr6 (321-486)||(15610153-15610318)
chr6 (321-450)||(5827617-5827746)
chr6 (321-450)||(3627378-3627507)
chr6 (334-470)||(7072520-7072656)
chr6 (334-413)||(24177710-24177789)
chr6 (13-46)||(15609857-15609890)
chr6 (341-399)||(32097141-32097199)
chr6 (406-458)||(4084597-4084649)
[»] scaffold0913 (3 HSPs)
scaffold0913 (116-318)||(3346-3547)
scaffold0913 (324-489)||(3590-3755)
scaffold0913 (13-69)||(3273-3329)
[»] scaffold0898 (3 HSPs)
scaffold0898 (116-318)||(2054-2255)
scaffold0898 (324-489)||(1846-2011)
scaffold0898 (13-69)||(2272-2328)
[»] scaffold0006 (1 HSPs)
scaffold0006 (334-413)||(203164-203243)
[»] scaffold0044 (1 HSPs)
scaffold0044 (334-456)||(11032-11154)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 48026517 - 48026214
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  48026517 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgagaataggagt 48026418  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48026417 ttgtataagggatgatacatgcacttttgttttggcaaaaactgaatggtttacttcagtctgtgaggtacatgttggcgaagttcttggactatcgtca 48026318  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||| |||||||||||||||    
T  48026317 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctaaaaaaaaatggtgggtagtttttcatctacacatcaggatgt 48026218  T
Q  313 taca 316  Q
    ||||    
T  48026217 taca 48026214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 321 - 489
Target Start/End: Complemental strand, 48026172 - 48026004
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  48026172 acaatattatgtcaactctagtgttgagtttacgaggagacaagcaaatgaagcagcccatagattagctaaggcgaccacgtcttcaactagtttttag 48026073  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    ||||||||| |||||||| ||||||||||| |||||||||  || ||||||||||||||||||||||||    
T  48026072 attttggtagaaataccagattgtattgaacacattttaagtaatgaaattatataagcttctttcctt 48026004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 426
Target Start/End: Original strand, 39774909 - 39775009
Alignment:
Q  326 attatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagatttt 425  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||| ||||||| ||| ||| ||||||||||||    
T  39774909 attatgtcaactttagtgttgagtttgtgaggagacaaacaaataaggcaatccatagattaactaaggcggccacatcctcaactaatttttagatttt 39775008  T
Q  426 g 426  Q
    |    
T  39775009 g 39775009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 458
Target Start/End: Original strand, 45421600 - 45421724
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    ||||||||||| ||||||||  | |||||||| |||||||  ||||||  ||||||||||||| || |||| |||| ||||||  ||||| |||| || |    
T  45421600 aactctagtgtggagtttattcgaagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagttagtttccagattctggttaata 45421699  T
Q  434 taccatattgtattgaaaacatttt 458  Q
    ||||||| ||||||||| |||||||    
T  45421700 taccataatgtattgaacacatttt 45421724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 487
Target Start/End: Complemental strand, 18570404 - 18570239
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||| ||| || |  || ||||||||||| |||||||||   |   |||||| ||     
T  18570404 acaatattatatcaactctagtgttgagtttgtgaggagacaag-aaacgagacaacttatggattagctaagacgaccacattcacgattagtttctaa 18570306  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcc 487  Q
    |||| | || |||||| ||||||||||||| |||||| ||| || |||||  ||||| ||| |||||    
T  18570305 atttggatagaaatactatattgtattgaacacatttaaaataatgaaatgttataaacttatttcc 18570239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 460
Target Start/End: Complemental strand, 21485658 - 21485534
Alignment:
Q  336 ctctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaata 435  Q
    ||||||||| |||||||| ||| |||||| ||||||||  | ||||  |||||||||||||  |||||  ||||||||||||   |||||| |  | |||    
T  21485658 ctctagtgtagagtttataaggtgacaagtaaatgaggttgtccatgaattagctaaggcggtcacattatcagctagttttcgaattttgattgacata 21485559  T
Q  436 ccatattgtattgaaaacattttaa 460  Q
    ||| ||||||||||| | |||||||    
T  21485558 ccaaattgtattgaacatattttaa 21485534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 25587933 - 25587973
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggc 374  Q
    |||||||||||||||||| |  |||||||||||||||||||    
T  25587933 aactctagtgttgagtttgttcggagacaagcaaatgaggc 25587973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 52586043 - 52585738
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |    
T  52586043 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaataagagt 52585944  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||    
T  52585943 ttgtataagagatgatacagacacttttgttttggcaaaaactgaatggtttactccagtatgtgaggtacatgttgacgaagctcttggactattgtca 52585844  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||| | |||||||||||||    
T  52585843 gctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgatgtt--aaaaaagtggtggatagtttttcatctgcacatcaggatgt 52585746  T
Q  313 tacagaat 320  Q
    ||||||||    
T  52585745 tacagaat 52585738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 53580990 - 53581288
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||     ||||||||||| |||||||| |    
T  53580990 aagaaggaaatgtgaaatgggtcaaaccagctcaaggaagatttaagtgcaatattgatgcttctttctcaca----cctaatagagtgggaataggagt 53581085  T
Q  113 ttctata-agggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtc 211  Q
    || |||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| | |  ||    
T  53581086 ttgtatataaggatgatacatgcacttttgttttggcaaaaactgaatggtttactctagtctgtgaggtacatgttggtgaagctcttggattgttatc 53581185  T
Q  212 agctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatg 311  Q
    |||||| ||||||| |||||| ||||||||| || ||||| |||||||||| ||||          ||||||||||||||||||||| ||| ||||||||    
T  53581186 agctttggaatgggttcatcaattacacttgagaactatcaattttgagctagatg--tcaaaaaagtggtggatagtttttcatttgcacgtcaggatg 53581283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 20685106 - 20685357
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||| |||||| | |    
T  20685106 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgtttctttcttacaactttctaatagagtgggaatagcagt 20685205  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||  ||| ||||||| | |  |||    
T  20685206 ttgtataagggatgttacattcacttttgtttcggcaaaaactgaatcgtttactccagtatgtgaggtacatgttggtcaagctcttggattgttatca 20685305  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttg 264  Q
     |||| ||||||  |||||| |||||||||||||| ||| ||||||||||||    
T  20685306 actttggaatggattcatcaattacacttgggaccaatcaattttgagcttg 20685357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 4136080 - 4136335
Alignment:
Q  8 gtgagaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaata 107  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||  |||||||||| | ||||||||||||||| | |||    
T  4136080 gtgacaagaaggaaatgtgaaatggaccaaacaagctgaaggaagatttaagtgtaatattgatatttctttctcctagctttctaatagagtgggtata 4136179  T
Q  108 ggaatttctataagggatgatacatgc-------acttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttctt 200  Q
     || ||| |||||||||||||||||||       | |||| || | |||||||| |||||||||||| |||| |||||||||||||||||||||| ||||    
T  4136180 agagtttgtataagggatgatacatgcaatttttattttttttatagcaaaaaccgaatggtttactgcagtatgtgaggtacatgttggcgaagctctt 4136279  T
Q  201 ggactatcgtcagctttagaatgggatcatcacttacacttgggacctatcgattt 256  Q
    ||| | |  |||||||||||||||| |||||| ||||| |||||||||||||||||    
T  4136280 ggattgttatcagctttagaatgggttcatcaattacatttgggacctatcgattt 4136335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 325 - 489
Target Start/End: Original strand, 20685459 - 20685623
Alignment:
Q  325 tattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattt 424  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  | ||||    
T  20685459 tattatgtcaactctagtgttgagtttgtgaggagacaagcaaatgagacagcccatagattagctaaggagaccacatcttcagctagtttccaaattt 20685558  T
Q  425 tggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    || || |||||||| ||||||||||| |||||||||| |  ||||| ||||||||||||||||||    
T  20685559 tgatagaaataccagattgtattgaacacattttaaatatcgaaatgatataagcttctttcctt 20685623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 321 - 489
Target Start/End: Complemental strand, 52585700 - 52585532
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||  ||    
T  52585700 acaatattatgtcaactctagtgttgagttcgtgatgagacaagcaaatgaggcagcccatagattaactaaggcggccacatcctcagctagtttccag 52585601  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    ||||||||| ||||| |  ||||||||||| |||||||||  || ||||| ||||||||||||||||||    
T  52585600 attttggtagaaatatcggattgtattgaacacattttaagtaatgaaatgatataagcttctttcctt 52585532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 8726591 - 8726765
Alignment:
Q  16 aaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttc 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||  || |||| ||||| | || ||||| || |||     
T  8726591 aaggaaatgtgaaatagatcaaaccagctgaaggaagatttaagtgcaaaattgatacttatttctttcaactttttaataaaatgggaatatgagtttg 8726690  T
Q  116 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 190  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| || |||||| |||||||||    
T  8726691 tataagggatgatatatgcactttcgttttggcaaaaaatgaatggtttactccaatccgtgaggaacatgttgg 8726765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 9078478 - 9078652
Alignment:
Q  16 aaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttc 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||  || |||| ||||| | || ||||| || |||     
T  9078478 aaggaaatgtgaaatagatcaaaccagctgaaggaagatttaagtgcaaaattgatacttatttctttcaactttttaataaaatgggaatatgagtttg 9078577  T
Q  116 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 190  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| || |||||| |||||||||    
T  9078578 tataagggatgatatatgcactttcgttttggcaaaaaatgaatggtttactccaatccgtgaggaacatgttgg 9078652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 321 - 485
Target Start/End: Original strand, 53581330 - 53581494
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||| | |||||| |||  ||||||| |||    
T  53581330 acaatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgaggcagcccatagattagataaggaggccacattttctactagtttctag 53581429  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttcttt 485  Q
    |||||||||||| || |||||||||||||| |||||||||   | ||||| | ||||||||||||    
T  53581430 attttggtaaaattatcatattgtattgaacacattttaagtgatgaaatgacataagcttcttt 53581494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 39453357 - 39453222
Alignment:
Q  131 atgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctttagaatgggatcat 230  Q
    ||||||||||||| ||| ||| |||||||| ||||||| |||| |||||||| |||||||||||| |||| || | |  ||||||||||||| || ||||    
T  39453357 atgcacttttgttatggtaaagactgaatgatttactctagtccgtgaggtatatgttggcgaagctcttagattgttatcagctttagaat-ggttcat 39453259  T
Q  231 cacttacacttgggacctatcgattttgagcttgatg 267  Q
     | ||||| ||| ||||||||||||||||||||||||    
T  39453258 taattacatttgagacctatcgattttgagcttgatg 39453222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 484
Target Start/End: Complemental strand, 39453133 - 39452972
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||||||||||||| ||| || ||| ||||||||||| |||||||| ||| ||||||||||||||   || | | ||| | |||||  ||| ||    
T  39453133 acaatattatgtcaactctaatgtggactttgtgaggagacaaacaaatgagtcagtccatagattagctacaacggctatatcctaagctaactttcag 39453034  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctt 484  Q
    ||||||||||||||||   ||||||||| | |||||||||| ||  |||| ||||||| |||||    
T  39453033 attttggtaaaaatac--gattgtattggacacattttaaataataaaatgatataagtttctt 39452972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 460
Target Start/End: Complemental strand, 42595716 - 42595590
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    ||||| ||||| |||||| ||||||||||||||||||| ||  | |||| |||| |||||||| ||||||  |||| ||||||| ||||||| || ||||    
T  42595716 aactcaagtgtagagtttgtgaggagacaagcaaatgaagctcctcataaattaactaaggcggccacattatcagttagttttcagatttttgttaaaa 42595617  T
Q  434 taccatattgtattgaaaacattttaa 460  Q
    ||||  | ||||||||| |||||||||    
T  42595616 taccggaatgtattgaagacattttaa 42595590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 460
Target Start/End: Complemental strand, 17058875 - 17058749
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    |||||||||||||||||| || ||||||||||||||||||  || |||   ||||| |||||||||||||  |||||||||||  | |||||||| |       
T  17058875 aactctagtgttgagtttgtgcggagacaagcaaatgaggttgctcatgagttagcaaaggcgaccacattgtcagctagtttccaaattttggtcatgc 17058776  T
Q  434 taccatattgtattgaaaacattttaa 460  Q
     |||| ||||||||||| |||||||||    
T  17058775 caccaaattgtattgaacacattttaa 17058749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 25537537 - 25537476
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccata 382  Q
    ||||| |||| | |||||||||||||||||| || |||||||||||||||||||||| ||||    
T  25537537 acaattttatttaaactctagtgttgagtttgtgcggagacaagcaaatgaggcagctcata 25537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 13503320 - 13503399
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctag 413  Q
    |||||| ||||||||||| |  |||| |||||||||||||  |||||||| |||||||||||| ||  ||||||||||||    
T  13503320 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag 13503399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 450
Target Start/End: Original strand, 8726934 - 8727054
Alignment:
Q  329 atgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggt 428  Q
    ||||||||||| | |||||||| ||||||||| ||  ||||||| ||  | | ||||||| |||||||  ||||||||||  ||||||| ||||||| ||    
T  8726934 atgtcaactcttgagttgagttgatgaggagaaaaa-aaatgagacaatcgaaagattaggtaaggcggacacatcttcaaatagttttcagatttttgt 8727032  T
Q  429 aaaaataccatattgtattgaa 450  Q
    | ||| |||| |||||||||||    
T  8727033 agaaaaaccagattgtattgaa 8727054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 450
Target Start/End: Original strand, 9078821 - 9078941
Alignment:
Q  329 atgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggt 428  Q
    ||||||||||| | |||||||| ||||||||| ||  ||||||| ||  | | ||||||| |||||||  ||||||||||  ||||||| ||||||| ||    
T  9078821 atgtcaactcttgagttgagttgatgaggagaaaaa-aaatgagacaatcgaaagattaggtaaggcggacacatcttcaaatagttttcagatttttgt 9078919  T
Q  429 aaaaataccatattgtattgaa 450  Q
    | ||| |||| |||||||||||    
T  9078920 agaaaaaccagattgtattgaa 9078941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 43640497 - 43640588
Alignment:
Q  325 tattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagttt 416  Q
    |||||||  |||||||  || |||||| || |||||||||||||||||| ||| |||   |||||||||||| ||||||  |||||||||||    
T  43640497 tattatgaaaactctaaggtagagtttgtgcggagacaagcaaatgagggagctcatgctttagctaaggcggccacattgtcagctagttt 43640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 489
Target Start/End: Complemental strand, 3856726 - 3856593
Alignment:
Q  356 ggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaataccatattgtattgaaaacat 455  Q
    |||||||||||| |||| || | |||||||||| ||| ||| ||||||  |||||||||||    ||||||||| |||||    ||| ||||||| ||||    
T  3856726 ggagacaagcaagtgagacaactcatagattagttaatgcggccacattctcagctagtttcctaattttggtataaatattcaattatattgaacacat 3856627  T
Q  456 tttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||| || |||||  ||||| |||||| ||||    
T  3856626 tttaaataatgaaatgttataaacttcttacctt 3856593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 10260130 - 10260431
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||| |||||||| |    
T  10260130 aagaaggaaatgtgaaattgatcaaaccagctgaaggaagatttaagtccaatattgatgcttctttctcctaactttctactagagtgggaataggagt 10260229  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||   ||    
T  10260230 ttgtataagggatgatacatgcacttttgttttggtaaaaactgaatggtttactccagtttgtgaggtacatgttggcgaagctcttggactatttcca 10260329  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
    ||||||||||||| |||||||||| | || |||||||||||||||||||||||||||        ||||||||||||||||||| | ||||||| |||||    
T  10260330 gctttagaatgggttcatcacttataattaggacctatcgattttgagcttgatgct--aaaaaagtggtggatagtttttcatctgcacatcatgatgt 10260427  T
Q  313 taca 316  Q
    ||||    
T  10260428 taca 10260431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 323 - 489
Target Start/End: Complemental strand, 17834450 - 17834284
Alignment:
Q  323 aatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagat 422  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||| |||||||||||  ||||    
T  17834450 aatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgagacaacccatagattagctaaggcggccacatcctcagctagtttccagat 17834351  T
Q  423 tttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||| || ||||| || | ||||||||| |||||||||  || ||||| ||||||||||||||||||    
T  17834350 tttgatagaaatatcagaatgtattgaacacattttaagtaatgaaatgatataagcttctttcctt 17834284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 321 - 489
Target Start/End: Original strand, 10260473 - 10260640
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||| ||||||| |   ||||||| |||    
T  10260473 acaatactatgtcaactctagtgttgagtttctgaagagacaagcaaatgaggtagcccatagatttgctaaggcggccacatccttgactagtttctag 10260572  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||||||||||||||| ||||||||||| || ||||||  || ||||| ||||||| ||||||||||    
T  10260573 attttggtaaaaataccagattgtattgaacac-ttttaagtaatgaaatgatataagtttctttcctt 10260640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 8783234 - 8783507
Alignment:
Q  11 agaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccat--------------ctttctaata 96  Q
    ||||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||||| |||||| |||||               ||||||||||    
T  8783234 agaagaaggaattgtgaaatggatcaaaccagttgaagagagatttaagtgcaatattgatgtttctttatcccaattttttaatcccaactttctaata 8783333  T
Q  97 gagtgagaataggaatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagt 196  Q
    ||||| ||||| || ||| || |||||| |||||| |||||||| ||||| ||||||||||| ||||||||| ||| ||| | |||||||||||| ||      
T  8783334 gagtgggaatatgagtttgtagaagggacgatacaagcacttttattttgacaaaaactgaacggtttactctagtatgtaatgtacatgttggccaaac 8783433  T
Q  197 tcttggactatcgtcagctttaga--atgggatcatcacttacacttgggacctatcgattttgagcttgatgc 268  Q
    ||||||| | |  ||| ||||| |  ||||| |||||| |||||||||||||||||  |||||||| |||||||    
T  8783434 tcttggattgttatcaactttataatatgggttcatcaattacacttgggacctatgaattttgagtttgatgc 8783507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 9605324 - 9605189
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||| || ||||||| ||||| || |    
T  9605324 aagaagaaaatgtgaaattgatcaaaccagctgaaagaatatttaagtgcaatattgatgactctttctcccaactttttattagagtgggaataagagt 9605225  T
Q  113 ttctataagggatgatacatgcacttttgttttggc 148  Q
    || ||||||||||||||||  |||||||||||||||    
T  9605224 ttgtataagggatgatacaaacacttttgttttggc 9605189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 326 - 483
Target Start/End: Original strand, 8783609 - 8783766
Alignment:
Q  326 attatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagatttt 425  Q
    |||||||  ||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||| || || |||| ||||||||    
T  8783609 attatgttgactctagtgttgagtttgtgacgagacaaggaaacgaggcagcccatagattagctaaggcgaccacatctccaacttgtttctagatttt 8783708  T
Q  426 ggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttct 483  Q
    |||| |||||| | |||||| |||  || ||||||  || ||||| ||||||||||||    
T  8783709 ggtagaaatactagattgtagtgagcacgttttaagtaatgaaataatataagcttct 8783766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 436
Target Start/End: Complemental strand, 8871930 - 8871815
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||||| |||| ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||  ||    
T  8871930 acaatattatgttaactttagtgttgagtttgtgaggatacaagcaaatgaggtagcccataaattagctaaggcgaccacatcatcagcttgtttcaag 8871831  T
Q  421 attttggtaaaaatac 436  Q
    ||||||||| ||||||    
T  8871830 attttggtagaaatac 8871815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 16912656 - 16912601
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatatt 68  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  16912656 aagaaggaaatgtgaaatggatcaaatcagcttaagaaagatttaagtgcaatatt 16912601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 426
Target Start/End: Complemental strand, 9605025 - 9604921
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||| |||||||||||||||||||| ||||||||||| || ||||  || |||||| ||||| ||||||||  ||||  |||| ||||||| ||    
T  9605025 acaatattatatcaactctagtgttgagtttgtgaggagacaaacagatgatcca-cccataaattagttaaggcgatgacattctcagttagttttcag 9604927  T
Q  421 attttg 426  Q
    ||||||    
T  9604926 attttg 9604921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 13523220 - 13523129
Alignment:
Q  322 caatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctag 413  Q
    |||| |||||| |||||| ||||||||||| |  |||| ||||||||||| |  |||||||| |||||||||||| ||  ||||||||||||    
T  13523220 caattttatgtaaactcttgtgttgagtttgtacggaggcaagcaaatgatgttgcccatagtttagctaaggcggccttatcttcagctag 13523129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 17834532 - 17834490
Alignment:
Q  278 gtggtggatagtttttcatttacacatcaggatgttacagaat 320  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  17834532 gtggtggatagtttttcatctgcacatcaggatgttacagaat 17834490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 13612743 - 13612664
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctag 413  Q
    |||||| ||||||||||| |  |||| ||||||||||| |  |||||||| |||||||||||| ||  ||||||||||||    
T  13612743 aactcttgtgttgagtttgtacggaggcaagcaaatgaagttgcccatagtttagctaaggcggccttatcttcagctag 13612664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 4424721 - 4424673
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccata 382  Q
    |||||||||||||||||| |  ||||||||||||||||||  |||||||    
T  4424721 aactctagtgttgagtttgtacggagacaagcaaatgaggttgcccata 4424673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 9605105 - 9605069
Alignment:
Q  278 gtggtggatagtttttcatttacacatcaggatgtta 314  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  9605105 gtggtggatagtttttcatttgcacatcaagatgtta 9605069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 18579935 - 18579630
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  18579935 aagaaggaaatgtgaaatggatcaaaccagcgaaaggaagatttaaatgcaatattgatgcttctttctcccagctttctaatagagtgggaataggagt 18579836  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |  |||    
T  18579835 ttgtataagggatgatacaggcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgtttgcgaagctcttggattgttatca 18579736  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
    ||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||| | ||| ||||| |||    
T  18579735 gctttggaatgagttcatcaattacacttgggacctatcgattttgagcttgatgc--caaaaaagtggtggatagtttttcatctgcacgtcaggttgt 18579638  T
Q  313 tacagaat 320  Q
    ||||||||    
T  18579637 tacagaat 18579630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 5848834 - 5849135
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  5848834 aagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaataggagt 5848933  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||| |||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||| |||||||||||   ||    
T  5848934 ttgtataagagatgatacatgcacttttgttttgacaaaagcataatggtttactccagtctgtgaggtacatgttagcgaagctcttggactattaaca 5849033  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
     ||||| |||||  |||||||||||| || |||| ||||||||||||  ||||||||        |||||||||| |||||||| |||||||||||||||    
T  5849034 actttaaaatggattcatcacttacaattaggacatatcgattttgaatttgatgct--aagaaagtggtggataatttttcatctacacatcaggatgt 5849131  T
Q  313 taca 316  Q
    ||||    
T  5849132 taca 5849135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 15745974 - 15745669
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||    ||||||||||||||| |||||||| |    
T  15745974 aagaaggaaatgtgaaatggatcaaaccagttgaagggagatttaagtgcaatattgatgcttttttctctatgctttctaatagagtgggaataggagt 15745875  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
     | |||||| ||||||||| | ||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |||| || | |  |||    
T  15745874 ctgtataagagatgatacaggtacttttgttttggtaaaaactgaatggcttactccagtctatgaggtgcatgttggcgaagctcttagattgttatca 15745775  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
    ||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||         ||||||||||||||||||| | ||| | |||||||    
T  15745774 gctttggaatgggttcatcaattacacttgggatctatcgattttgagcttgatgc--caaaaacgtggtggatagtttttcatctgcacgttaggatgt 15745677  T
Q  313 tacagaat 320  Q
    ||||||||    
T  15745676 tacagaat 15745669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 33 - 268
Target Start/End: Complemental strand, 33171292 - 33171059
Alignment:
Q  33 atcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctataagggatgatacat 132  Q
    ||||||||| || ||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||  ||||||| ||| ||||||||||||  |||    
T  33171292 atcaaaccaactaaagaaatatttaagtacaatattgatgtttctttctcccatctttctaatagagtggtaataggagtttgtataagggatga--cat 33171195  T
Q  133 gcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctttagaatgggatcatca 232  Q
     ||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||| ||||||| | |  |||| ||||||||| | | ||||    
T  33171194 acacttttgttttggctaaaactgaatggtttactctaatctctgaggtacatgttggcgaagctcttggattgttatcagatttagaatgagtttatca 33171095  T
Q  233 cttacacttgggacctatcgattttgagcttgatgc 268  Q
     ||||||||||  |||||||||||||||||||||||    
T  33171094 attacacttggttcctatcgattttgagcttgatgc 33171059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 321 - 489
Target Start/End: Complemental strand, 18579592 - 18579420
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  | |||||||||||||||||||  ||    
T  18579592 acaatattatgtcaactttagtgttgagtttgtgaggagacaaacaaatgaggcagcccatagattagctaagtaggccacatcttcagctagtttccag 18579493  T
Q  421 attttggtaaaaatac----catattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||| || ||||||    |||||||||||||| |||| ||||  || ||||| ||||||| ||||||||||    
T  18579492 attttgatagaaataccatacatattgtattgaacacatgttaagtaatgaaatgatataagtttctttcctt 18579420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 321 - 460
Target Start/End: Original strand, 5849177 - 5849315
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||  ||||||| ||| |||||||| ||    
T  5849177 acaatgttatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggcagctcatagattagctgaggcagccacatcctcaactagttttcag 5849276  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaa 460  Q
    ||||||||| |||| ||  ||||||||| |||||||||||    
T  5849277 attttggtagaaatgcccgattgtattg-aaacattttaa 5849315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 321 - 465
Target Start/End: Complemental strand, 15745631 - 15745484
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagatta---gctaaggcgaccacatcttcagctagtttt 417  Q
    |||||||||||||||||||  |||||| ||| | |||||||||||||||||| ||||||||||||||   ||||||| | |||||||||||||||||||     
T  15745631 acaatattatgtcaactcttatgttgaatttgtaaggagacaagcaaatgagacagcccatagattattagctaaggaggccacatcttcagctagtttc 15745532  T
Q  418 tagattttggtaaaaataccatattgtattgaaaacattttaaaaaaa 465  Q
     ||||||| ||| |||||||| ||||||||||| |||||| |||||||    
T  15745531 cagattttagtagaaataccagattgtattgaacacatttaaaaaaaa 15745484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 36098514 - 36098679
Alignment:
Q  23 tgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctataagg 122  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||| ||| || ||||||| |   | ||||||||||  |||||||| |||  |||||     
T  36098514 tgtgaaatggattaaaccaagtgaaggatgatttaagtgcaatattaatgtttttttctcctaatatactaatagagttggaataggagtttgcataaga 36098613  T
Q  123 gatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 190  Q
    |||||||||  || ||||||||||| ||||| ||||  |||||||||||  | |||||||||||||||    
T  36098614 gatgatacacacatttttgttttggtaaaaattgaagagtttactccag--tatgaggtacatgttgg 36098679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 334 - 458
Target Start/End: Complemental strand, 3981845 - 3981721
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    ||||||||||| ||||||||  |||||||||| |||||||  ||||||  ||||||||||||| || |||| |||||||||||  ||||| |||| || |    
T  3981845 aactctagtgtggagtttattcggagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagctagtttccagattctggttaata 3981746  T
Q  434 taccatattgtattgaaaacatttt 458  Q
    ||||| | ||||||||| |||||||    
T  3981745 taccagaatgtattgaacacatttt 3981721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 36098844 - 36098980
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||||||||| ||| | |||||||||| |||| ||  |||| | ||||||| ||| | |    
T  36098844 acaatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcagctaatttctcg 36098943  T
Q  421 attttggtaaaaataccatattgtattgaaaacattt 457  Q
    ||||| ||| |||||| | ||||| ||||| ||||||    
T  36098944 atttttgtataaatactagattgtgttgaacacattt 36098980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 19051619 - 19051701
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacat 403  Q
    ||||||||| | ||||| || |||||||||| ||| |||||||| |||||| |||||| ||||||||||||| ||||||||||    
T  19051619 acaatattacgacaactataatgttgagtttgtgaagagacaagaaaatgaagcagccaatagattagctaaagcgaccacat 19051701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 403
Target Start/End: Complemental strand, 33170972 - 33170891
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacat 403  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||| | || |||| | || |||||||||||||||    
T  33170972 acaatattatgtcaactctagttttgagttcttgaggagacaagcaaatgagacggctcata-aataactaaggcgaccacat 33170891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 30355365 - 30355294
Alignment:
Q  323 aatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggc 395  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||| |  |||||| |||||||||    
T  30355365 aatattatgtcaa-tctagtgttgagtttgtgaagagacaagcaaatgaagcaacatatagatcagctaaggc 30355294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 40492555 - 40492515
Alignment:
Q  8 gtgagaagaaggaaatgtgaaatggatcaaaccagctgaag 48  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  40492555 gtgacaagaaggaaatgtgaaatggatcaaaccagctgaag 40492515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 5509817 - 5509872
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatatt 68  Q
    |||||| ||||||||||||||| |||| ||||||| |||||||||| |||||||||    
T  5509817 aagaagaaaatgtgaaatggataaaactagctgaaagaagatttaaatgcaatatt 5509872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 19051327 - 19051366
Alignment:
Q  8 gtgagaagaaggaaatgtgaaatggatcaaaccagctgaa 47  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  19051327 gtgacaagaaggaaatgtgaaatggatcaaaccagctgaa 19051366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 22849524 - 22849603
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctag 413  Q
    |||||| ||||||||||| |  |||| |||||||||||||  |||||||| |||||||||||| ||  ||||||||||||    
T  22849524 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag 22849603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 458
Target Start/End: Complemental strand, 10421078 - 10420976
Alignment:
Q  356 ggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaataccatattgtattgaaaacat 455  Q
    ||||||||| ||||||||||||||| |  |||||||||| | ||||||  |||||||||||  |  || ||   ||||||||||||||||||||| ||||    
T  10421078 ggagacaagtaaatgaggcagcccacactttagctaaggaggccacattatcagctagtttccaagttctgtataaaataccatattgtattgaacacat 10420979  T
Q  456 ttt 458  Q
    |||    
T  10420978 ttt 10420976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 19051364 - 19051463
Alignment:
Q  103 gaataggaatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttgg 202  Q
    ||||| || ||| ||||| |||| |||||  || ||||||||||| |||||||||||| | |||||||||||| || ||||||||| |||||  ||||||    
T  19051364 gaatatgagtttgtataaaggataatacagacaattttgttttggaaaaaactgaatgatctactccagtctgcga-gtacatgttagcgaaactcttgg 19051462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 460
Target Start/End: Complemental strand, 19933991 - 19933865
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    ||||| ||||| |||||| |  ||||||||||||||||||| ||||||  |||||| |||||  ||||||  || ||||||||  | |||||||| |       
T  19933991 aactcgagtgtagagtttgttcggagacaagcaaatgaggctgcccatgaattagcaaaggctgccacattatcggctagtttccatattttggttacgc 19933892  T
Q  434 taccatattgtattgaaaacattttaa 460  Q
     |||| ||||||||||| |||||||||    
T  19933891 caccacattgtattgaacacattttaa 19933865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 26370455 - 26370528
Alignment:
Q  322 caatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggc 395  Q
    ||||||||||  ||||| | |||||||||| || |||| |||||||||||||  || |||| ||||||||||||    
T  26370455 caatattatgaaaactcgactgttgagtttgtgcggaggcaagcaaatgaggttgctcataaattagctaaggc 26370528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 30355454 - 30355418
Alignment:
Q  278 gtggtggatagtttttcatttacacatcaggatgtta 314  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  30355454 gtggtggatagtttttcatttgcacatcatgatgtta 30355418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 33171047 - 33171011
Alignment:
Q  282 tggatagtttttcatttacacatcaggatgttacaga 318  Q
    ||||||||||||||| | |||||||||||||||||||    
T  33171047 tggatagtttttcatctgcacatcaggatgttacaga 33171011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 17237859 - 17237551
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||| || |    
T  17237859 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaaatgcaatattgttgcttctttctcctagctttctaatagagtgggaatatgagt 17237760  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgag----gtacatgttggcgaagttcttggactatc 208  Q
    || ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| |||||     ||||||||| ||||||||||| ||| |     
T  17237759 ttgtataagggatgatacagacacttttgttttggcaaaaactgaatggtttaccccagtcggtgagatacatacatgttgacgaagttcttgaactgtt 17237660  T
Q  209 gtcagctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcagg 308  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||        ||||||||||||||||||| | ||||||| |    
T  17237659 atcagctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgacgct--agaaaagtggtggatagtttttcatctccacatcatg 17237562  T
Q  309 atgttacagaa 319  Q
    |||||||||||    
T  17237561 atgttacagaa 17237551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 32296264 - 32296028
Alignment:
Q  20 aaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| | |||||||| ||| ||||    
T  32296264 aaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctaacaattttctaatagagggggaataggagtttgtata 32296165  T
Q  120 agggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctttag 219  Q
    | ||||||     |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |  |||  ||| |    
T  32296164 atggatgag----gcacttttattttggcaaaaactgaatggtttactccagtccgtgaggtacatgttggcgaagctcttggattgttatcatttttgg 32296069  T
Q  220 aatgggatcatcacttacacttgggacctatcgattttgag 260  Q
    |||| | |||||| |||||||||||||||||||||||||||    
T  32296068 aatgagttcatcaattacacttgggacctatcgattttgag 32296028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 321 - 489
Target Start/End: Complemental strand, 17237512 - 17237344
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||| || ||||| | ||||||| |||||||||||  ||    
T  17237512 acaatactatgtcaactctagtgttgagtttgtgaggaggcaaacaaatgaggcagcacatagataagttaaggaggccacatcctcagctagtttccag 17237413  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    ||||||||| |||||||| ||| ||||||| |||||||||  || ||||| ||||||||||||||||||    
T  17237412 attttggtataaataccagattatattgaacacattttaagtaatgaaatgatataagcttctttcctt 17237344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 321 - 489
Target Start/End: Complemental strand, 32295932 - 32295765
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||  ||    
T  32295932 acaatatcatgtcaactctagtgttgagtttgtgagaagacaaacaaatgaggcagcc-atagattagctaaggataccacatcttcagctagtttccag 32295834  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||| || ||||| || ||||||||||| ||||||| |  || ||||| ||||||||||||||||||    
T  32295833 attttgatagaaatatcagattgtattgaacacatttttagtaatgaaatgatataagcttctttcctt 32295765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 321 - 489
Target Start/End: Original strand, 20174605 - 20174773
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||  |||||   | ||||| ||||||| || ||| |||||||||||| |||    
T  20174605 acaatattatgtcaattctagtgttgagtttgtgaggagacaagcaaatgaaacagcctgcatattagttaaggcggccgcattttcagctagtttctag 20174704  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||| || ||||| || ||||||||||| |||||||||  || |||||  ||||| |||||||||||    
T  20174705 attttgatagaaatatcagattgtattgaacacattttaagtaatgaaatgttataaacttctttcctt 20174773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 20174318 - 20174425
Alignment:
Q  46 aaggaagatttaagtgcaatattgatgcttctttctcccat---ctttctaatagagtgagaataggaatttctataagggatgatacatgcacttttgt 142  Q
    |||||| |||||||||||||||| ||| |||||||| | |    |||||||||| || | ||||| || ||| ||||||||||||||||| |||||||||    
T  20174318 aaggaaaatttaagtgcaatattaatgtttctttcttctagtaactttctaataaagcgggaataagagtttgtataagggatgatacatacacttttgt 20174417  T
Q  143 tttggcaa 150  Q
    ||||||||    
T  20174418 tttggcaa 20174425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 13596622 - 13596874
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |    
T  13596622 aagaaggaaatgtgaaatggatcaagccagttaaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaatagaagt 13596721  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||| |||||     ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |  |||    
T  13596722 ttgtataagagatgag----gcaattttgttttggcaaaaactgaatggtttactcgagtctgggaggtacatgttggcgaagctcttggactgttatca 13596817  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgct 269  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  13596818 gctttagaatgggttcatcagttacacttgggacctatcgattttgagcttgatgct 13596874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 23040473 - 23040168
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||  | ||||||||||||||| |||||||| |    
T  23040473 aagaaggaaatgtgaaatgaatcaaaccagctcaaggaagattttagtgcaatattgatgcttctttctcatagctttctaatagagtgggaataggagt 23040374  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
     | ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |  |||    
T  23040373 ctgtataaaggatgatacaggcacttttattttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaaactcttggattgttatca 23040274  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
     || | ||||||| | |||  |||||||||||||||||||||||||||||||||||         |||||||| |||||||||| |||||||||||||||    
T  23040273 tctatggaatgggttaatccattacacttgggacctatcgattttgagcttgatgc--caaaaaagtggtggacagtttttcatctacacatcaggatgt 23040176  T
Q  313 tacagaat 320  Q
    ||||||||    
T  23040175 tacagaat 23040168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 48859144 - 48859398
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |    
T  48859144 aagaaggaaatgtgaaatggatcaaaccaactgaaggaagatttaagtgcaatattgatgcttctttctcccaactttctaatagagtgagaataagagt 48859243  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| || | ||  ||  |||    
T  48859244 ttgtataagggatgatacatgcatttttgttttggcaaaaactgaatgatttactccggtctgtgaggcacatgttggcgaagctc-tagatgattatca 48859342  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 268  Q
     |||||||||| | | || | ||||||||| |||||||||||||||||||||||||    
T  48859343 actttagaatgagtttattaattacacttgagacctatcgattttgagcttgatgc 48859398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 22910874 - 22911179
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||| |||||||| |    
T  22910874 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttcattctcacaactttctaatatagtgggaataggagt 22910973  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
     | |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| || | || | |  |||    
T  22910974 ctgtataagggatgatacatgtacttttgttttggcaaaaactaaatggcttactccagtatgtgaggtacatgttggcgaagctcgtagattgttatca 22911073  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 312  Q
    ||||| ||||||| |||||| ||||| ||||||  ||||||||||||||||||||          ||||||||||||||||||| |  || |||||||||    
T  22911074 gctttggaatgggttcatcaattacatttgggatttatcgattttgagcttgatg--gcaaaaaagtggtggatagtttttcatctgtacgtcaggatgt 22911171  T
Q  313 tacagaat 320  Q
    ||||||||    
T  22911172 tacagaat 22911179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 26754585 - 26754834
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||| |||| |||||||| |||||||||  ||||||||||||||||| |||||||||||||||||||||  | |||| ||||||||||||||||||| |    
T  26754585 aagaaagaaacgtgaaatgaatcaaaccatgtgaaggaagatttaagtacaatattgatgcttctttctcataactttataatagagtgagaataggagt 26754684  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    ||      ||||||||||||| |||||| ||||| ||||| |||| ||||||||||| || |||||||||||||||||||||| ||||||| | |  |||    
T  26754685 tt------gggatgatacatgaacttttattttgacaaaagctgagtggtttactccggtttgtgaggtacatgttggcgaagctcttggattgttatca 26754778  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 268  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  26754779 gctttagaatgggttcatcaattacacttgggacctatcgattttgaacttgatgc 26754834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 321 - 489
Target Start/End: Complemental strand, 23040130 - 23039961
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagac-aagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagttttta 419  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| |||||| | ||||||||| ||| |||||| |    
T  23040130 acaatattatgtcaactctagtgttgagtttgtaaggagaccaagcaaatgaggcagcccatagattaactaaggaggccacatctttagcaagttttca 23040031  T
Q  420 gattttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||||||| |||||||||||| |||| || |||||||||  || ||||| |||||||||| |||||||    
T  23040030 gattttggtagaaataccatattatattaaacacattttaagtaatgaaatgatataagcttatttcctt 23039961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 321 - 460
Target Start/End: Original strand, 26754922 - 26755061
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||    
T  26754922 acaatattatgtcaactatagtgttgagtttgtgaggagacaagcaaatgaggcagcccatagattatctaaggcggccacatcctcaactagtttttag 26755021  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaa 460  Q
    |||||| || ||||| |  ||||||||||| |||||||||    
T  26755022 attttgatagaaatatcggattgtattgaacacattttaa 26755061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 321 - 460
Target Start/End: Original strand, 13596962 - 13597101
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||| ||||||| |||    
T  13596962 acaatactatgtcaactctagtgttgagtttgtgaggagacaagcaaatgaggcagcccctagattagctaaggcggccatatcctcaactagtttctag 13597061  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaa 460  Q
    |||||| || |||||||| ||| ||||||| |||||||||    
T  13597062 attttgttagaaataccaaattatattgaacacattttaa 13597101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 321 - 488
Target Start/End: Original strand, 15026403 - 15026566
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||||||||||||||||||||| ||| ||| | |||||||||||||    |||||||||||||||||||||||   |||||||||||||||||||  ||    
T  15026403 acaatattatgtcaactctagtgctgactttgtaaggagacaagcaa----ggcagcccatagattagctaaggaagccacatcttcagctagtttccag 15026498  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcct 488  Q
    ||||||||| |||||||| ||||||||||| |||||||||  || ||||| ||||||| |||||||||    
T  15026499 attttggtagaaataccagattgtattgaacacattttaagtaatgaaatgatataagtttctttcct 15026566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 321 - 489
Target Start/End: Original strand, 22911217 - 22911385
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||||| || ||||||||||||||||| | ||||||||||| |||||||  ||    
T  22911217 acaatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgagggaggccatagattagctaaggaggccacatcttcatctagtttccag 22911316  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    ||||||| | ||||| || ||| ||||||| |||||||||  ||  |||| |||||||||| |||||||    
T  22911317 attttggcagaaatatcagattatattgaacacattttaagtaataaaatgatataagcttatttcctt 22911385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 321 - 489
Target Start/End: Original strand, 48859486 - 48859654
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||| | ||||| ||||||||| | || |||| |||  ||||||| ||    
T  48859486 acaatattatatcaactctagtgttgagtttgtgaagagacaagcaaataaggcagtctatagactagctaaggtggccgcatcctcaattagttttcag 48859585  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    ||||||||| |||||||  ||||||||||| |||||||||  ||  |||| ||| ||| ||||||||||    
T  48859586 attttggtagaaatacccgattgtattgaacacattttaagtaataaaatgatacaagtttctttcctt 48859654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 23586238 - 23586334
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggc-gaccacatcttcagctagttt 416  Q
    ||||||||||||||||  || |||| ||||| ||||||||||| |||||||| || ||||||||||| | ||||| ||||||||| ||| |||||||    
T  23586238 acaatattatgtcaaccttaatgttcagtttgtgaggagacaaacaaatgagacaacccatagattatccaaggctgaccacatcctcaactagttt 23586334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 47295175 - 47295245
Alignment:
Q  408 agctagtttttagattttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataag 478  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||  || |||||| ||||||    
T  47295175 agctagtttttagattttggttaaaataccaaattgtattgaatacatcttaattaatgaaattttataag 47295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 21505015 - 21505094
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctag 413  Q
    |||||| ||||||||||| |  |||| |||||||||||||  |||||||| |||||||||||| ||  ||||||||||||    
T  21505015 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag 21505094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 26037104 - 26037039
Alignment:
Q  134 cacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttct 199  Q
    ||||||||| ||||| ||||||||||| |||| |||| | |||||||||||||||||  |||||||    
T  26037104 cacttttgtgttggcgaaaactgaatgatttagtccaatttgtgaggtacatgttggttaagttct 26037039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 416
Target Start/End: Complemental strand, 26036882 - 26036787
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagttt 416  Q
    |||||||||||| ||||  |||||||||||||| || || ||| |||||||| |||| ||||| ||| |||  |||||||| |||||  |||||||    
T  26036882 acaatattatgttaacttcagtgttgagtttataagaaggcaaacaaatgagacagctcatagtttaactatagcgaccacttcttccactagttt 26036787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 28544168 - 28544216
Alignment:
Q  325 tattatgtcaactctagtgttgagtttatgaggagacaagcaaatgagg 373  Q
    |||||||| |||||||||||||||||| |  | ||||||||||||||||    
T  28544168 tattatgtaaactctagtgttgagtttgtacgaagacaagcaaatgagg 28544216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 44021895 - 44022144
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||| |    
T  44021895 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttcttccagctttctaataaagtgggaataggagt 44021994  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || ||||| ||||||||||  || ||||||||||||||||||||||||||| ||| |||| |||||||     |||||||||| ||||||||| |  |||    
T  44021995 ttgtataatggatgatacagacatttttgttttggcaaaaactgaatggttaacttcagtttgtgagg-----gttggcgaagctcttggactgttatca 44022089  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 268  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  44022090 gctttagaatgggttcatcacttacacttgggacctatc-attttgaacttgatgc 44022144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 32922779 - 32923030
Alignment:
Q  17 aggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttct 116  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||| || ||| |    
T  32922779 aggaaatgtgaaatggatcaaaccaactgaaggaatatttaagtgcaatattgatgcttctttctcccatctttataatagactgggaataagagtttgt 32922878  T
Q  117 ataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctt 216  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  | ||||| | |  |||||||    
T  32922879 ataagggatgatgtaggcacttttgttttggcaaaaactgaatggtttactccagtttgtgatgtacatgttggcgaaacttttggattgttatcagctt 32922978  T
Q  217 tagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 268  Q
    |||||| |  |||||| ||||| || | ||||||||||||||||||||||||    
T  32922979 tagaattgattcatcaattacattttgaacctatcgattttgagcttgatgc 32923030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 30940018 - 30939765
Alignment:
Q  15 gaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaattt 114  Q
    ||||||||||||||||  || ||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||| |||| ||||| || |||    
T  30940018 gaaggaaatgtgaaataaattaaatcagctgaaagaagatttaagtgcaatattgatacttctttctcccagctttcaaataaagtgggaataagagttt 30939919  T
Q  115 ctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagc 214  Q
     |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||| | ||| ||||  | | |  || |     
T  30939918 gtataagggatgatacatgcactttcgttttggcaaaaactgaatgatttactcaagtctgtgaggtatatgttgacaaagctcttttattgttatccgt 30939819  T
Q  215 tttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 268  Q
    |||||||| || |||||| ||||||||| |||||||||||||||||||||||||    
T  30939818 tttagaataggttcatcaattacacttgagacctatcgattttgagcttgatgc 30939765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 321 - 489
Target Start/End: Original strand, 42132081 - 42132248
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||  |     
T  42132081 acaatattatatcaactctagtgttgagtttgtgaggagacaaacaaatgaggcaacccatagattagctaaggtgaccacatcttcatctagtttccaa 42132180  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    ||||||||||||| | |||||||||||||| |||||||||| || ||||| |||||||||| |||||||    
T  42132181 attttggtaaaaa-aacatattgtattgaacacattttaaataatgaaatgatataagcttatttcctt 42132248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 43896137 - 43896374
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 112  Q
    ||||| ||||||| |||||||||||| ||||||| || |||||||||||| ||||||||| || ||||||||| ||||||||||| |||  |||| ||      
T  43896137 aagaaagaaatgttaaatggatcaaagcagctgaggggagatttaagtgctatattgatgttt-tttctcccagctttctaatagggtggaaatatgagg 43896235  T
Q  113 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 212  Q
    || |||||||||| ||||||  |||||||||||| ||||||||||||  ||||||||||| || ||| |||||||||| |||  ||||||  |    | |    
T  43896236 ttgtataagggattatacataaacttttgttttgacaaaaactgaataatttactccagtatgcgagatacatgttggtgaaactcttggcttgatatta 43896335  T
Q  213 gctttagaatgggatcatcacttacacttgggacctatc 251  Q
    ||||||||||| | | |||| ||||||||||||| ||||    
T  43896336 gctttagaatgagtttatcaattacacttgggacatatc 43896374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 452
Target Start/End: Original strand, 44022232 - 44022363
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||| |||||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||| ||||| |  |||||| ||||||||||| |||    
T  44022232 acaatactatgtcaactctagtgttgagtttgtgagaagacaaacaaatgagacagctcatagattagttaaggtggtcacatcctcagctagtttctag 44022331  T
Q  421 attttggtaaaaataccatattgtattgaaaa 452  Q
    ||||||||| ||||||||||||| ||| ||||    
T  44022332 attttggtagaaataccatattgcattaaaaa 44022363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 39220664 - 39220807
Alignment:
Q  47 aggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctataagggatgatacatgcacttttgttttg 146  Q
    |||| |||||||||||||||||||||||||||| ||| | |   | ||||||||  |||||||| | |  |||| ||||||||||||||||||||||||     
T  39220664 aggaggatttaagtgcaatattgatgcttctttttccaaacaaaccaatagagttggaataggagtatgcataatggatgatacatgcacttttgtttta 39220763  T
Q  147 gcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 190  Q
    || |||||||||||||||| |||| | |||||||| ||||||||    
T  39220764 gcgaaaactgaatggtttagtccaatttgtgaggtgcatgttgg 39220807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 316
Target Start/End: Original strand, 42131899 - 42132039
Alignment:
Q  174 tgtgaggtacatgttggcgaagttcttggactatcgtcagctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnn 273  Q
    |||||||||||||||||||||  ||||||| | |  ||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||| |||         
T  42131899 tgtgaggtacatgttggcgaaactcttggattgttatcaactttcgaatgggttcatcaattacacttgtgacctatcgattttgagcttggtgc--caa 42131996  T
Q  274 nnnngtggtggatagtttttcatttacacatcaggatgttaca 316  Q
        ||||||||||||||||||| | |||||||||||||||||    
T  42131997 aaaagtggtggatagtttttcatctgcacatcaggatgttaca 42132039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 447
Target Start/End: Original strand, 32924095 - 32924221
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    ||||||| ||||||||||||||||||||||| | |  ||||||| ||||||| || | ||||||||| |||||| |  ||||  ||||| ||||||| ||    
T  32924095 acaatatcatgtcaactctagtgttgagtttgtaaaaagacaagtaaatgagacaactcatagattaactaagggggtcacactttcagatagttttcag 32924194  T
Q  421 attttggtaaaaataccatattgtatt 447  Q
    ||||||||| ||||| || ||||||||    
T  32924195 attttggtagaaatatcaaattgtatt 32924221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 42131785 - 42131842
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattga 70  Q
    |||||||||||||||||| ||||||||||||| || || |||||||||||||||||||    
T  42131785 aagaaggaaatgtgaaatagatcaaaccagctaaaagaggatttaagtgcaatattga 42131842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 12751148 - 12751083
Alignment:
Q  323 aatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattag 388  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||||||| ||| | ||||||||||    
T  12751148 aatattatgtaaactctagtattgagtttatgagaagacacgcaaatgacgcaactcatagattag 12751083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 26098350 - 26098264
Alignment:
Q  110 aatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagt 196  Q
    ||||| |||||||||||| || |||| |||||| ||||| |||||||||| ||||   ||| | ||||||||||||||||| |||||    
T  26098350 aatttgtataagggatgagacgtgcaattttgtgttggctaaaactgaatagtttgaaccaatttgtgaggtacatgttggtgaagt 26098264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 458
Target Start/End: Original strand, 47142682 - 47142806
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    ||||||||||| ||||||||  | |||||| | ||| |||  ||||||  |||||||||| || || |||| |||||||||||  ||||| |||| || |    
T  47142682 aactctagtgtggagtttattcgaagacaaacgaataaggttgcccatgaattagctaagtcggcctcatcatcagctagtttccagattctggttaata 47142781  T
Q  434 taccatattgtattgaaaacatttt 458  Q
    ||||| | ||||||||| |||||||    
T  47142782 taccagaatgtattgaacacatttt 47142806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 27394627 - 27394722
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagttt 416  Q
    |||||||||||| ||||| |||||||||||| | ||||   |||||||| || || || |||| ||||||||| || ||| |||||| ||||||||    
T  27394627 acaatattatgttaactccagtgttgagtttgtaaggaattaagcaaataagacaaccaatagtttagctaagacggccatatcttctgctagttt 27394722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 26056348 - 26056401
Alignment:
Q  373 gcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttg 426  Q
    ||||| ||||||| |||||| ||| ||||||| |||||||||||||| ||||||    
T  26056348 gcagctcatagatcagctaaagcggccacatcctcagctagtttttaaattttg 26056401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 95 - 320
Target Start/End: Original strand, 15609892 - 15610115
Alignment:
Q  95 tagagtgagaataggaatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaa 194  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||    
T  15609892 tagagtgggaatatgagtttgtataagggatgatacatgcacttttgttttggcaaaaactgaatgatttactccagtttgtgagctacatgttggtgaa 15609991  T
Q  195 gttcttggactatcgtcagctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttc 294  Q
    | ||||||| | |  |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||         |||||||||||||||||    
T  15609992 gatcttggattgttatcagctttagaatgagttcatcacttacacttaggacctatcgattttgagcttgatgc--gaaaaaagtggtggatagtttttc 15610089  T
Q  295 atttacacatcaggatgttacagaat 320  Q
    || | |||||||||||||||||||||    
T  15610090 atctgcacatcaggatgttacagaat 15610115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 116 - 268
Target Start/End: Original strand, 5827373 - 5827525
Alignment:
Q  116 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagct 215  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| | |  ||||||    
T  5827373 tataagggatgatacagacacttttgttttggcaaaaactgaatggtttactccagtctgtaaggtacatgttggcaaagctcttggattgttatcagct 5827472  T
Q  216 ttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 268  Q
     | ||| ||| |||||| ||||| ||||||||||||||||||||| |||||||    
T  5827473 atggaaagggttcatcaattacatttgggacctatcgattttgagtttgatgc 5827525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 486
Target Start/End: Original strand, 15610153 - 15610318
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||| ||| ||||| |  ||    
T  15610153 acaatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggtagcccatagattagctaagacgaccacatcctcaactagtatccag 15610252  T
Q  421 attttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttc 486  Q
    |||||| || ||| || | ||||||||||| |||||||||  || ||||| |||||| ||||||||    
T  15610253 attttgatagaaacactagattgtattgaacacattttaagtaatgaaatgatataaacttctttc 15610318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 321 - 450
Target Start/End: Original strand, 5827617 - 5827746
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||||| | |||| ||||||||||||||  ||    
T  5827617 acaatattatatcaactctagtgttgagtttgtaaggagacaagcaaatgaggcagctcatacattagctaaggaggccacgtcttcagctagtttccag 5827716  T
Q  421 attttggtaaaaataccatattgtattgaa 450  Q
    ||||||||| ||||| || |||||||||||    
T  5827717 attttggtagaaatatcagattgtattgaa 5827746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 450
Target Start/End: Original strand, 3627378 - 3627507
Alignment:
Q  321 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttag 420  Q
    |||||||| ||| ||||| | |||||||||| | ||||  |||| |||||||| || |||||| |||||||||| | ||||||||||||||||||||||     
T  3627378 acaatattttgttaactccaatgttgagtttgtaaggaagcaagaaaatgaggtagaccatagtttagctaaggtggccacatcttcagctagtttttaa 3627477  T
Q  421 attttggtaaaaataccatattgtattgaa 450  Q
    || |||||  |||||||| |||||||||||    
T  3627478 atattggttgaaataccaaattgtattgaa 3627507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 470
Target Start/End: Complemental strand, 7072656 - 7072520
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    |||||||||||||||||| ||  ||||||| |||||||||  || |||   ||||| |||||||||||||  ||||||| |||  |||||||||| | |     
T  7072656 aactctagtgttgagtttgtgcagagacaatcaaatgaggttgctcatgagttagcaaaggcgaccacattgtcagctaatttccagattttggtcatac 7072557  T
Q  434 taccatattgtattgaaaacattttaaaaaaagaaat 470  Q
     |||| |||||||| || |||||||||| || |||||    
T  7072556 caccaaattgtattaaacacattttaaataatgaaat 7072520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 24177710 - 24177789
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctag 413  Q
    |||||| ||||||||||| |  |||| |||||||||||||  |||||||| |||||||||||| ||  ||||||||||||    
T  24177710 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag 24177789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 15609857 - 15609890
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctga 46  Q
    ||||||||||||||||||||||||||||||||||    
T  15609857 aagaaggaaatgtgaaatggatcaaaccagctga 15609890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 32097141 - 32097199
Alignment:
Q  341 gtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgacc 399  Q
    |||||||||||||| ||||||||||||| ||||  || ||||  |||||||||||||||    
T  32097141 gtgttgagtttatgcggagacaagcaaacgaggtcgctcataatttagctaaggcgacc 32097199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 4084597 - 4084649
Alignment:
Q  406 tcagctagtttttagattttggtaaaaataccatattgtattgaaaacatttt 458  Q
    |||||||||||  | || |||||| |||||||||||||||||||| |||||||    
T  4084597 tcagctagtttccaaatattggtagaaataccatattgtattgaacacatttt 4084649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 116 - 318
Target Start/End: Original strand, 3346 - 3547
Alignment:
Q  116 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagct 215  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| | || || |||    
T  3346 tataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgaggtacatgttggcgaagctctaggattgtcatcggct 3445  T
Q  216 ttagaatgggatcatcacttacacttgggacctatcgattttga-gcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgtta 314  Q
    |||||||||| ||||||  |||| ||| |||||||||||||| | ||||||||          |||||||||| |||||||| | |||||||||||||||    
T  3446 ttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatg--acaaaaaggtggtggataatttttcatctgcacatcaggatgtta 3543  T
Q  315 caga 318  Q
    ||||    
T  3544 caga 3547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 324 - 489
Target Start/End: Original strand, 3590 - 3755
Alignment:
Q  324 atattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagatt 423  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||| || | | ||||||||||||| || ||||||| ||| |||||||  | |||    
T  3590 atattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttccaaatt 3689  T
Q  424 ttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||  |||| ||||||| ||  ||| |||||||||| || |||||  |||||||||||||||||    
T  3690 ttggtcgaaatcccatattataccgaacacattttaaataatgaaatgttataagcttctttcctt 3755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 3273 - 3329
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattg 69  Q
    ||||||||||||||||||||||||||||| || || ||||||||| |||||| ||||    
T  3273 aagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg 3329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 116 - 318
Target Start/End: Complemental strand, 2255 - 2054
Alignment:
Q  116 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagct 215  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| | || || |||    
T  2255 tataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgaggtacatgttggcgaagctctaggattgtcatcggct 2156  T
Q  216 ttagaatgggatcatcacttacacttgggacctatcgattttga-gcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgtta 314  Q
    |||||||||| ||||||  |||| ||| |||||||||||||| | ||||||||          |||||||||| |||||||| | |||||||||||||||    
T  2155 ttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatg--acaaaaaggtggtggataatttttcatctgcacatcaggatgtta 2058  T
Q  315 caga 318  Q
    ||||    
T  2057 caga 2054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 324 - 489
Target Start/End: Complemental strand, 2011 - 1846
Alignment:
Q  324 atattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagatt 423  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||| || | | ||||||||||||| || ||||||| ||| |||||||  | |||    
T  2011 atattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttccaaatt 1912  T
Q  424 ttggtaaaaataccatattgtattgaaaacattttaaaaaaagaaattatataagcttctttcctt 489  Q
    |||||  |||| ||||||| ||  ||| |||||||||| || |||||  |||||||||||||||||    
T  1911 ttggtcgaaatcccatattataccgaacacattttaaataatgaaatgttataagcttctttcctt 1846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 2328 - 2272
Alignment:
Q  13 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattg 69  Q
    ||||||||||||||||||||||||||||| || || ||||||||| |||||| ||||    
T  2328 aagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg 2272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 203243 - 203164
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctag 413  Q
    |||||| ||||||||||| |  |||| |||||||||||||  |||||||| |||||||||||  ||  ||||||||||||    
T  203243 aactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcagccttatcttcagctag 203164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 456
Target Start/End: Original strand, 11032 - 11154
Alignment:
Q  334 aactctagtgttgagtttatgaggagacaagcaaatgaggcagcccatagattagctaaggcgaccacatcttcagctagtttttagattttggtaaaaa 433  Q
    |||||| ||||||||||| |  |||| |||||||||||||  || ||||| |||||||| ||| ||  ||| |||||||| |   | ||||||||| |||    
T  11032 aactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctcatagtttagctaaagcggccttatcatcagctagctcccaaattttggtagaaa 11131  T
Q  434 taccatattgtattgaaaacatt 456  Q
    ||||  ||||||||||| |||||    
T  11132 tacctcattgtattgaacacatt 11154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University