View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_low_21 (Length: 472)
Name: NF15932_low_21
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_21 |
 | |
|
| [»] scaffold0370 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 22782244 - 22781784
Alignment:
| Q |
1 |
tacaatgcatgaaaaagtatt----taccatgtaactattgcgtactaggcaaacgacgtgatctgcaatgcttaatcattcatttgactagtttcgcaa |
96 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||| |||||||||||| |||||| |||||||||| ||| |
|
|
| T |
22782244 |
tacaatgcatgaaaaagtattgacgtacggtgtaactattgcgtactagctaaacgacatgatctacaatgcttaatccttcattcgactagtttcacaa |
22782145 |
T |
|
| Q |
97 |
gtagtccatgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggtctttggtgca |
196 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22782144 |
gtagtgcatgataactcccatcctagtgagattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatctattgacaaggtctttggtgca |
22782045 |
T |
|
| Q |
197 |
tatctccaccagagagcgtgtccattgacaaggtccttgatgcatatctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgct |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22782044 |
tatctccaccagagagcgtgtccattgacaaggtccttgatgcatatctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgct |
22781945 |
T |
|
| Q |
297 |
aagaacatggtagataaccatgcatgtgaggagtcttgtagtggatagtgcgtg-nnnnnnnnagggaggctagtgcgtgtactgatggtgcaacataca |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
22781944 |
aagaacatggtagataaccatgcatgtgaggagtcttgtagtggatagtgcgtgtttttttttagggagggtagtgcgtgtgctgatggtgcaacataca |
22781845 |
T |
|
| Q |
396 |
ttgcatggaccgtcatagtaaagtaaatcatgtcgtggttatatgtacgagtgtagaatat |
456 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
22781844 |
ttgcatggaccgtcatagtaaagtatatcatgccgtggttatatgtacgagtgtagaatat |
22781784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 9028 - 9089
Alignment:
| Q |
103 |
catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct |
164 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
9028 |
catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct |
9089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 14318 - 14379
Alignment:
| Q |
103 |
catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct |
164 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14318 |
catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct |
14379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 17418513 - 17418456
Alignment:
| Q |
244 |
ctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaagaa |
301 |
Q |
| |
|
|||||| | ||| |||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
17418513 |
ctccacaaaagattgtgacttctccatcacttttcaaagtggttagtggtgctaagaa |
17418456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 3412727 - 3412674
Alignment:
| Q |
245 |
tccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaa |
298 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
3412727 |
tccaccagagatcgtgtcttctatctcactcctcaaagtagttagtggtgctaa |
3412674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 8821847 - 8821922
Alignment:
| Q |
107 |
ataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgaca |
182 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| | ||| |||||| | ||||||||| ||||||||| ||||||| |
|
|
| T |
8821847 |
ataactcccatggtagtgggatcgtggcgccccacattcggcttcagtttcctctcctagacatgatctattgaca |
8821922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 2883147 - 2883066
Alignment:
| Q |
105 |
tgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggt |
186 |
Q |
| |
|
||||||||| ||| ||||||||| ||| | || |||||| |||| ||||||||||| | |||||||||| |||||||||| |
|
|
| T |
2883147 |
tgataactctcatggtagtgggatcatggtgtcctatgttcggctttaatctcctctcatcgacatgatccgttgacaaggt |
2883066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University