View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_22 (Length: 466)
Name: NF15932_low_22
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 44828153 - 44828603
Alignment:
| Q |
1 |
tacaggatatattatcttttgagaacaaccgtgcaaaggacaatcaaagatctacnnnnnnnttacaaaaataaagacacacaatataatcattatctta |
100 |
Q |
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| T |
44828153 |
tacaggatatattatcttttgagaacaaccgtgcaaaggacaatcaaagatctacaaaaaaattacaaaaataaagacacacaatataatcattatctta |
44828252 |
T |
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| Q |
101 |
ttatagacaacaatattgtggtgnnnnnnnnggcaaaatattgatannnnnnncttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatc |
200 |
Q |
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| T |
44828253 |
ttatagacaacaatattgtggtgaaaaaaaaggcaaaatattgatatttttttcttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatc |
44828352 |
T |
|
| Q |
201 |
taaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatat |
300 |
Q |
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| T |
44828353 |
taaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatat |
44828452 |
T |
|
| Q |
301 |
cgctcctgcatattttgattgagaacatttgtccatgacataaaattagctgctcgtacgcaattaatacaacacatatcacaaagaaacttatatttgt |
400 |
Q |
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| T |
44828453 |
cgctcctgcatattttgattgagaacatttgtccatgacataaaattagctgctcatacgtaattaatacaacacatatcacaaagaaacttatttttgt |
44828552 |
T |
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| Q |
401 |
aatacatattagaattaacaatcatcaaagctatattaatcttgtaaatta |
451 |
Q |
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| T |
44828553 |
aatacatattagaattaacaatcatcaaagctatattaatcttgtaaatta |
44828603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 332
Target Start/End: Original strand, 8370640 - 8370763
Alignment:
| Q |
209 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
308 |
Q |
| |
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|||| ||||||||||||||| || | ||||| |||| | || |||||| | ||||||| || ||||||||||||||||||||||| ||| ||||||| |
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| T |
8370640 |
cacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatattttgataatgctcctg |
8370739 |
T |
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| Q |
309 |
catattttgattgagaacatttgt |
332 |
Q |
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| T |
8370740 |
catattttgattgaaaatatttgt |
8370763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 332
Target Start/End: Original strand, 8372042 - 8372165
Alignment:
| Q |
209 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
308 |
Q |
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|||||||||||||||||||| || | ||||| |||||| || |||||| | ||||||| || ||| || |||||| | |||||| ||| |||||||| |
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| T |
8372042 |
cactcaagcttttgttcaaacatatctcagtttgagatccattttctccaaaatcttcagaatgttgatctttttccctaatatttcgataacgctcctg |
8372141 |
T |
|
| Q |
309 |
catattttgattgagaacatttgt |
332 |
Q |
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|||||||||||||| || |||||| |
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| T |
8372142 |
catattttgattgaaaatatttgt |
8372165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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