View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_25 (Length: 456)
Name: NF15932_low_25
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 186 - 443
Target Start/End: Original strand, 49821773 - 49822030
Alignment:
| Q |
186 |
tcaaattgtatatgggcaacttatgttggatgtttacacattttggaaaacctctttgtacactacatttgacgtcgtagtgatgtaatcgtcaatttca |
285 |
Q |
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| T |
49821773 |
tcaaattgtatatgggcaacttatgttggatgtttacacattttagaaaacctctttgtacattacatttgacgtcgtagtgatataatcgtcaatttca |
49821872 |
T |
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| Q |
286 |
tcggtcaacagaatttttagacaacttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccggttgcagaagatagatactaa |
385 |
Q |
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| T |
49821873 |
tcagtcaacagaatttttagactacttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccggttgcggtagatagatcctaa |
49821972 |
T |
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| Q |
386 |
ttccttaatgtcggacgctcaattgcaaacgatatagtgtgtgcacgtatttgttact |
443 |
Q |
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| T |
49821973 |
ttccttaatgtcagacgctcaattgcaaacgatatagtgtgtgcacgtatttgttact |
49822030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 49821589 - 49821746
Alignment:
| Q |
1 |
cttacaagtggaggatcgaagagacaaagaaaaatgaaaaatggcagctgtactggacaataataacaattaggtttactagatcgtctacccgtgatgt |
100 |
Q |
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| T |
49821589 |
cttacaagttgaggatcgaaaagacaaagaaaaatgaaaaatggcagctgtactggacaatagtaacaattaggtttgctagatcgtctacccgtgatgt |
49821688 |
T |
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| Q |
101 |
cgcacatgtcataaatattatgnnnnnnntatgtgaagcacaaattataaccacaaaat |
159 |
Q |
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| T |
49821689 |
cgcacggatcataaatattatg-aaaaaatatgtgaaacacaaattataaccacaaaat |
49821746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 31686042 - 31685987
Alignment:
| Q |
309 |
acttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccg |
364 |
Q |
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| T |
31686042 |
acttcttgatgtaactcttgagattgcaacatatagttgaccatgggagaagaccg |
31685987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30218392 - 30218469
Alignment:
| Q |
1 |
cttacaagtggaggatcgaagagacaaagaaaaatgaaaaatggcagctgtactggacaataataacaattaggttta |
78 |
Q |
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| T |
30218392 |
cttacaagtggaggatcgaaaagacaaagaaaaatgaaaaatggcagctgtactgtacaatagtaacaattaggttta |
30218469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 240 - 364
Target Start/End: Original strand, 55820151 - 55820275
Alignment:
| Q |
240 |
tttgtacactacatttgacgtcgtagtgatgtaatcgtcaatttcatcggtcaacagaatttttagacaacttctcgacgtaactattgagattgcaaca |
339 |
Q |
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| T |
55820151 |
tttgtacgctacatttgacgtcgtattgatgcaatcgtcgttttcatcaatcaacaaaatttttataccatctctcgacgtaactcttgagattgcaaca |
55820250 |
T |
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| Q |
340 |
tatagctgacaatgagagaagaccg |
364 |
Q |
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| T |
55820251 |
tatagctgaccatgggagaataccg |
55820275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 26855050 - 26854967
Alignment:
| Q |
281 |
tttcatcggtcaacagaatttttagacaacttctcgacgtaactattgagattgcaacatatagctgacaatgagagaagaccg |
364 |
Q |
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| T |
26855050 |
tttcgtcggtcatcaaaattttaagcccacttcttgatgtaactcttgagattgcaacatatagttgaccatgggagaataccg |
26854967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 30442912 - 30442961
Alignment:
| Q |
331 |
attgcaacatatagctgacaatgagagaagaccggttgcagaagatagat |
380 |
Q |
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| T |
30442912 |
attgcaacatatagctgcccatgtgagaagaccggttgtggaagatagat |
30442961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 16222746 - 16222710
Alignment:
| Q |
77 |
tactagatcgtctacccgtgatgtcgcacatgtcata |
113 |
Q |
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| T |
16222746 |
tactagatcgtctacccgtgctgccgcacatgtcata |
16222710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 14231983 - 14231934
Alignment:
| Q |
331 |
attgcaacatatagctgacaatgagagaagaccggttgcagaagatagat |
380 |
Q |
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| T |
14231983 |
attgcaacatatagctgcccatgtgagaagaccggttgtggaagatagat |
14231934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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