View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_26 (Length: 451)
Name: NF15932_low_26
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_26 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 211 - 429
Target Start/End: Original strand, 146180 - 146398
Alignment:
| Q |
211 |
gtgttttctcacctaagtaatcaaccacagtttttccattagtgtatcgaccagtaggtttgccaccatcaaagtctataccgtaaggaggaaattttgc |
310 |
Q |
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| T |
146180 |
gtgttttctcacctaagtaatcaaccacagtttttccattagtgtttcgaccagtaggtttgccaccatcaaagtctataccgtaaggaggaaattttgc |
146279 |
T |
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| Q |
311 |
atttgattgaattggaagataattgttgttaccactgtcaacaagggaatcaccaaaaacatagatagctggaatctgttttgggtgatataaaattgtt |
410 |
Q |
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| T |
146280 |
atttgattgaattggaagataattgttgttaccactgtcaacaagggaatcaccaaaaacatagatagctggaatctgttttgagtgatatgaatttgtt |
146379 |
T |
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| Q |
411 |
gatgaagctaggggtaaca |
429 |
Q |
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| T |
146380 |
gatgatgctaggggtaaca |
146398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 212 - 429
Target Start/End: Original strand, 36700229 - 36700446
Alignment:
| Q |
212 |
tgttttctcacctaagtaatcaaccacagtttttccattagtgtatcgaccagtaggtttgccaccatcaaagtctataccgtaaggaggaaattttgca |
311 |
Q |
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| T |
36700229 |
tgttttctcacctatgtaaacaacagttgtttttccattagtgcatcgaccagtaggtttggcaccaccaaagtctataccgtaaggaggaaattttgca |
36700328 |
T |
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| Q |
312 |
tttgattgaattggaagataattgttgttaccactgtcaacaagggaatcaccaaaaacatagatagctggaatctgttttgggtgatataaaattgttg |
411 |
Q |
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| T |
36700329 |
tttgatagaattggaagataattgttgttaccactgtcaacaagggaatcaccaaaaacatagatagctggaatatgttttgggtgatatgaaattgttg |
36700428 |
T |
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| Q |
412 |
atgaagctaggggtaaca |
429 |
Q |
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| T |
36700429 |
acgatgctaggggtaaca |
36700446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 36700162 - 36700218
Alignment:
| Q |
7 |
aagtccggacactagacactacacatcaataccaatattaatttgagaaaagagaat |
63 |
Q |
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| T |
36700162 |
aagtccggacactggacactacacatcaataccgatattaatttgagaaaagagaat |
36700218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 48100387 - 48100349
Alignment:
| Q |
329 |
ataattgttgttaccactgtcaacaagggaatcaccaaa |
367 |
Q |
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| T |
48100387 |
ataattgttgttgccactgtcaacaagtgaatcaccaaa |
48100349 |
T |
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