View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_27 (Length: 442)
Name: NF15932_low_27
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_27 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 33441463 - 33441871
Alignment:
| Q |
13 |
aaaatattgcaataattttccacataaacccttaattcacgacatcaagctactctctacttcacctctagctagctctagcaattcattgtatatggtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33441463 |
aaaatattgcaataattttccacataaacccttaattcacgacatcaagctactctctacttcagctctagctagctctagcaattcattgtatatggtt |
33441562 |
T |
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| Q |
113 |
tcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataacaaa |
212 |
Q |
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| T |
33441563 |
tcaccatataaacaatttcagagtaagttgaagtgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaa |
33441662 |
T |
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| Q |
213 |
atgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctcctt |
312 |
Q |
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| T |
33441663 |
atgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgg--gaaaaaaacagcctctcctt |
33441760 |
T |
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| Q |
313 |
gaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacggggga |
412 |
Q |
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| T |
33441761 |
gaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaa |
33441860 |
T |
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| Q |
413 |
caccactagca |
423 |
Q |
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| T |
33441861 |
cgctactagca |
33441871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 121 - 423
Target Start/End: Original strand, 33451791 - 33452091
Alignment:
| Q |
121 |
taaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataacaaaatgatatt |
220 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33451791 |
taaacaatttcagagtaagttgaactgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatatt |
33451890 |
T |
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| Q |
221 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctccttgaaacatc |
320 |
Q |
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| T |
33451891 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgg--gaaaaaaacagcctctccttgaaacatc |
33451988 |
T |
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| Q |
321 |
acacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacgggggacaccacta |
420 |
Q |
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| T |
33451989 |
acacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctacta |
33452088 |
T |
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| Q |
421 |
gca |
423 |
Q |
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||| |
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| T |
33452089 |
gca |
33452091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 1582 - 1400
Alignment:
| Q |
13 |
aaaatattgcaataattttccacataaacccttaattc--acgacatcaagctactctctacttcacctctagctagctctagcaattcattgtatatgg |
110 |
Q |
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||||||||||||||||||||||||||||||| || | || ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |
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| T |
1582 |
aaaatattgcaataattttccacataaacccctagacctaacaacatcaagctactgtctacttcacctctagctagctctaacacttcattgtatatgg |
1483 |
T |
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| Q |
111 |
tttcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttat |
195 |
Q |
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| T |
1482 |
tttcaccatataagcaa-ttcag-gtaggataaactgacatattatccctcagcaaataatctcaatgcctctcatggcttttat |
1400 |
T |
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