View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_low_28 (Length: 436)

Name: NF15932_low_28
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_low_28
NF15932_low_28
[»] chr6 (11 HSPs)
chr6 (28-436)||(15575891-15576300)
chr6 (75-167)||(6091920-6092012)
chr6 (75-294)||(17858937-17859161)
chr6 (74-125)||(13194291-13194342)
chr6 (101-159)||(15320064-15320121)
chr6 (101-159)||(15387142-15387199)
chr6 (19-67)||(15574893-15574941)
chr6 (91-181)||(6177860-6177948)
chr6 (101-159)||(15370705-15370762)
chr6 (75-159)||(13803963-13804046)
chr6 (103-159)||(15376929-15376984)
[»] chr7 (23 HSPs)
chr7 (70-399)||(21472761-21473094)
chr7 (73-436)||(7816256-7816624)
chr7 (102-421)||(20341931-20342254)
chr7 (75-350)||(7494275-7494555)
chr7 (101-181)||(7152077-7152157)
chr7 (74-177)||(7776350-7776453)
chr7 (74-181)||(21544679-21544786)
chr7 (74-181)||(7143532-7143639)
chr7 (75-159)||(18494555-18494639)
chr7 (101-176)||(9121052-9121127)
chr7 (80-217)||(9687085-9687224)
chr7 (21-79)||(2632523-2632581)
chr7 (221-343)||(316164-316289)
chr7 (75-159)||(14074464-14074547)
chr7 (75-159)||(14384492-14384575)
chr7 (74-186)||(24469088-24469199)
chr7 (74-186)||(24474036-24474147)
chr7 (111-181)||(9404664-9404734)
chr7 (250-343)||(2629827-2629922)
chr7 (80-139)||(9071392-9071451)
chr7 (24-74)||(20446212-20446262)
chr7 (91-159)||(2352149-2352215)
chr7 (74-158)||(4091345-4091429)
[»] chr1 (15 HSPs)
chr1 (114-421)||(24902647-24902959)
chr1 (117-353)||(12484827-12485068)
chr1 (101-365)||(30782688-30782959)
chr1 (75-181)||(50048204-50048310)
chr1 (66-181)||(23224582-23224697)
chr1 (250-365)||(21451013-21451128)
chr1 (74-164)||(34522095-34522185)
chr1 (75-164)||(27682904-27682993)
chr1 (77-187)||(17836791-17836901)
chr1 (77-187)||(30676620-30676729)
chr1 (74-159)||(9329224-9329309)
chr1 (84-159)||(11768892-11768966)
chr1 (101-164)||(23420501-23420562)
chr1 (20-60)||(12424020-12424060)
chr1 (26-74)||(24903387-24903435)
[»] scaffold0103 (1 HSPs)
scaffold0103 (77-383)||(36494-36804)
[»] scaffold0855 (1 HSPs)
scaffold0855 (81-436)||(2021-2381)
[»] scaffold0847 (1 HSPs)
scaffold0847 (81-436)||(2186-2546)
[»] chr5 (12 HSPs)
chr5 (75-374)||(19570809-19571112)
chr5 (172-350)||(22230780-22230963)
chr5 (131-363)||(12338892-12339129)
chr5 (74-217)||(20715756-20715900)
chr5 (77-199)||(24842892-24843015)
chr5 (74-159)||(17768628-17768713)
chr5 (74-181)||(11273683-11273790)
chr5 (75-187)||(18451061-18451173)
chr5 (79-159)||(25682127-25682207)
chr5 (75-125)||(24518964-24519014)
chr5 (101-159)||(29196495-29196553)
chr5 (28-74)||(30072155-30072201)
[»] chr2 (12 HSPs)
chr2 (74-370)||(31000370-31000669)
chr2 (131-407)||(35708741-35709021)
chr2 (75-213)||(41256208-41256348)
chr2 (234-365)||(16592742-16592875)
chr2 (101-176)||(30477725-30477800)
chr2 (252-405)||(41256357-41256508)
chr2 (305-420)||(1734067-1734182)
chr2 (76-181)||(28455128-28455233)
chr2 (250-349)||(25475040-25475139)
chr2 (20-74)||(35707772-35707826)
chr2 (131-343)||(18531732-18531951)
chr2 (27-74)||(21505231-21505278)
[»] chr4 (13 HSPs)
chr4 (101-370)||(27303718-27303991)
chr4 (75-350)||(22219732-22220009)
chr4 (102-350)||(51885669-51885920)
chr4 (74-280)||(12840697-12840907)
chr4 (75-248)||(47023552-47023734)
chr4 (101-183)||(24579965-24580047)
chr4 (101-199)||(12805794-12805893)
chr4 (78-181)||(10450301-10450404)
chr4 (80-217)||(13553462-13553601)
chr4 (108-214)||(9781922-9782030)
chr4 (74-137)||(20717941-20718004)
chr4 (85-136)||(30797703-30797754)
chr4 (318-363)||(9782144-9782189)
[»] chr8 (12 HSPs)
chr8 (250-418)||(26853338-26853505)
chr8 (76-346)||(13305448-13305721)
chr8 (76-308)||(28900132-28900364)
chr8 (101-176)||(26853570-26853646)
chr8 (74-167)||(12957529-12957621)
chr8 (20-74)||(13082029-13082083)
chr8 (250-365)||(26883253-26883369)
chr8 (74-139)||(32240446-32240511)
chr8 (149-350)||(11307704-11307907)
chr8 (74-125)||(13803096-13803147)
chr8 (20-74)||(16054263-16054317)
chr8 (20-74)||(29047408-29047462)
[»] chr3 (7 HSPs)
chr3 (75-409)||(14541073-14541413)
chr3 (80-181)||(10342963-10343064)
chr3 (221-343)||(25884170-25884295)
chr3 (101-167)||(2728473-2728539)
chr3 (101-181)||(25918112-25918191)
chr3 (106-181)||(18066857-18066931)
chr3 (78-177)||(33913400-33913499)
[»] scaffold0362 (1 HSPs)
scaffold0362 (101-370)||(9726-9997)
[»] scaffold0171 (2 HSPs)
scaffold0171 (75-159)||(7337-7421)
scaffold0171 (83-181)||(22527-22624)
[»] scaffold0108 (1 HSPs)
scaffold0108 (85-181)||(9857-9953)


Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 28 - 436
Target Start/End: Complemental strand, 15576300 - 15575891
Alignment:
Q  28 ttttctttgaatttaaagacaaataggatgagaattagagtagttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtca 127  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  15576300 ttttctttgaatttaaagacaaataggatgagaattagaggagttgttgatggacgaaattggcaagtgcatcaaatcgtaacaagtaataaagtagtca 15576201  T
Q  128 gattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaagtaaataaaagtgaatagaattgtagtgaattt 227  Q
    | |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15576200 gtttatcgttctccgcagggattgtcgttcaacttagtaactaataaaacttatatcaaaagcgaaagtaaataaaagtgaatagaattgcagtgaattt 15576101  T
Q  228 cccttcccaatgcaagattata-ttttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaa 326  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  15576100 ccctgcccaatgcaagattatatttttgtgattaagatgagtaacgatgattagtgtttccttgaatccccccttcgcttttattgaaattatcttttaa 15576001  T
Q  327 gaaatcaaacaacttatgtggtgcatcattaatttaatgaatcccaactgtaaaacctgcactagtttctttagataacttgtttagaaccaaccatagt 426  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15576000 gaaatcaaacaacttatgtggcgcatcattaatttaatgaatcccaactgtaaaacctgcactagtttctttagataacttgtttagaaccaaccagagt 15575901  T
Q  427 tatgtactac 436  Q
    ||||||||||    
T  15575900 tatgtactac 15575891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 6091920 - 6092012
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaa 167  Q
    ||||||||||||||  ||||| ||| ||||||||| || |||||||||||  || |||||||||| |||| |||||||||||| | |||||||    
T  6091920 tgatggacgaaattgacaagtgcattaaatcgtaaaaaataataaagtagaaagtttatcgttctccacaaggattgtcgttctacttagtaa 6092012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 294
Target Start/End: Original strand, 17858937 - 17859161
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataa 174  Q
    ||||||||||||||  || || ||| |||| |||||||||||| ||||||| || |||||||| |||| | |||||||| ||||| |||  || || |||    
T  17858937 tgatggacgaaattgacatgtgcatcaaatagtaacaagtaattaagtagtaagtttatcgtttttcatatggattgtctttcaacttatcaattagtaa 17859036  T
Q  175 aacttatatcaaa--agcgaaagtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatattt-tgtgattaagatgagt 268  Q
    ||||||| |||||  || |||| |||| | |  ||||| |||||| ||   | |||| | || |||||||||||||||  ||| ||||||| ||||| ||    
T  17859037 aacttat-tcaaaagagtgaaattaaaaagagatgaattgaattgaagggtttaattgctctgcccaatgcaagattaggtttgtgtgattcagatgtgt 17859135  T
Q  269 aacgatgattagtgtttccttgaatc 294  Q
    |||||||||||| |  ||||||||||    
T  17859136 aacgatgattagggaatccttgaatc 17859161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 13194342 - 13194291
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 125  Q
    ||||||||||||||| |||||| ||  |||||||||||||||||||||||||    
T  13194342 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagt 13194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 15320121 - 15320064
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||||||| ||||||||||| || ||||| ||||||||| ||||||||||||||    
T  15320121 aaatcgtaacaagcaataaagtagtaagtttatc-ttcttcacaaggattgtcgttcaa 15320064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 15387199 - 15387142
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||||||| ||||||||||| || ||||| ||||||||| ||||||||||||||    
T  15387199 aaatcgtaacaagcaataaagtagtaagtttatc-ttcttcacaaggattgtcgttcaa 15387142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 15574893 - 15574941
Alignment:
Q  19 gttagtactttttctttgaatttaaagacaaataggatgagaattagag 67  Q
    |||||||||||||||||| |||| |||||||||| ||||||| ||||||    
T  15574893 gttagtactttttctttgcatttgaagacaaataagatgagatttagag 15574941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 6177948 - 6177860
Alignment:
Q  91 caagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttat 181  Q
    ||||| ||| |||||||||||||||| |||||||| || || | | ||||||||||| ||||||||||| |||| || ||| |||||||||    
T  6177948 caagtgcatcaaatcgtaacaagtaacaaagtagtaagttttttg-tcttcacaggg-ttgtcgttcaacttagcaattaacaaaacttat 6177860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 15370762 - 15370705
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||| ||| ||||||||||| || ||||| ||||||||| ||||||||||||||    
T  15370762 aaatcgtaataagcaataaagtagtaagtttatc-ttcttcacaaggattgtcgttcaa 15370705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 13804046 - 13803963
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||||||||  ||||| ||  |||||||||||| |||||||||||| || | |||| ||| || ||||||||| ||||||    
T  13804046 tgatggacgaaattgacaagtgcaccaaatcgtaacaattaataaagtagtaagttaatcg-tctccatagggattgtagttcaa 13803963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 15376984 - 15376929
Alignment:
Q  103 atcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||||| ||||||||| | || ||||| ||||||||| ||||||||||||||    
T  15376984 atcgtaacaaggaataaagtaataagtttatc-ttcttcacaaggattgtcgttcaa 15376929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 70 - 399
Target Start/End: Complemental strand, 21473094 - 21472761
Alignment:
Q  70 gttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaact 169  Q
    |||||||||||||||||||| ||||| ||  ||||| |||||||| |||||||||| || || || |||| ||||  ||||||||||||| ||||||| |    
T  21473094 gttgttgatggacgaaattatcaagtgcaccaaatcataacaagttataaagtagtaagtttctcattctccacaaagattgtcgttcaacttagtaatt 21472995  T
Q  170 aataaaacttatatcaaaagcgaaagtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagatta-tattttgtgattaagatg 265  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||   |||||| |||| |||||||||||||||   |||||||||| |||||    
T  21472994 aataaaacttatttcaaaagcgaaagtaaataaaaatgaatagaattgcagagttgaattgccctgcccaatgcaagattaggtttttgtgattcagatg 21472895  T
Q  266 agtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatg 365  Q
    | |||||   ||||| |||||||||||||  || |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  21472894 attaacggaaattagggtttccttgaatcctccattcgtctttattgaaattatcttttaagaaaccaaacaacttatgtggtgcatcattgaattaatg 21472795  T
Q  366 aatcccaactgtaaaacctgcactagtttcttta 399  Q
    |||| |||| |||||||   ||||||||||||||    
T  21472794 aatctcaacggtaaaactcacactagtttcttta 21472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 73 - 436
Target Start/End: Complemental strand, 7816624 - 7816256
Alignment:
Q  73 gttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaat 172  Q
    ||||||||||||||||  ||||| ||| | || |||||||||| ||||||| |  | ||||  || | |||| ||||||| |||||| ||||||| ||||    
T  7816624 gttgatggacgaaattgacaagtgcatcatattgtaacaagtactaaagtaatatgtttatatttttccacaaggattgttgttcaacttagtaattaat 7816525  T
Q  173 aaaacttatatcaaaa-gcgaaagtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatatttt-gtgattaagatgag 267  Q
    ||||||||| |||||| ||||||||||  ||||||||||||||||| ||   |||||| | || |||||||||| ||||  |||| ||||| |||||||     
T  7816524 aaaacttatttcaaaaagcgaaagtaataaaaagtgaatagaattgaagggttgaattactctgcccaatgcaaaattaggtttttgtgatgaagatgat 7816425  T
Q  268 taacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaa 367  Q
    |||  | |||||| ||||| ||||||| || ||||  |||||||| | ||||||||||||| | ||||||||||||| || ||||||||  |||||||||    
T  7816424 taagaacgattagggtttcattgaatccccgcttcatctttattgtaattatcttttaagagaccaaacaacttatgcggggcatcattgttttaatgaa 7816325  T
Q  368 tcccaactgtaaaacctgcactagtttctttagataacttgtttagaaccaaccatagttatgtactac 436  Q
    |||||||  ||| |||| ||| |||||||||| ||||||||| ||| || ||||| |||  ||||||||    
T  7816324 tcccaaccttaagacctacacaagtttctttaaataacttgtgtaggacgaaccagagtcgtgtactac 7816256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 102 - 421
Target Start/End: Complemental strand, 20342254 - 20341931
Alignment:
Q  102 aatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaactta-tatc-aaaagcgaaagtaaa 199  Q
    |||||||||||||||||||| | | || ||||| ||||  | |||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||    
T  20342254 aatcgtaacaagtaataaagcaataagtttatcattctctagagggattgtcgttcaacttagtaattaataaaacttattatcaaaaagcgaaagtaaa 20342155  T
Q  200 taaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattata-ttttgtgattaagatgagtaacgatgattagtgtttccttgaatct 295  Q
    |||||||||||||||||| ||   |||||| | || ||||||||||||||| | |||||||||| |||||| |||||  |||||  |||||||||||||     
T  20342154 taaaagtgaatagaattgcagggttgaattgctctgcccaatgcaagattagatttttgtgattcagatgattaacggcgattaaagtttccttgaatc- 20342056  T
Q  296 ccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaatcccaactgtaaaacctgcac-tagttt 394  Q
    ||||||||  ||||||  | |||| |||||||||| ||||||| |||| ||||| | | || |||||||||||||||   ||||||||   ||  |||||    
T  20342055 ccccttcgtatttatt--aattatattttaagaaaccaaacaatttatatggtgaaactttgatttaatgaatcccatgggtaaaacccatacgaagttt 20341958  T
Q  395 ctttagataacttgtttagaaccaacc 421  Q
    ||||| ||||||||| ||| |||||||    
T  20341957 ctttaaataacttgtgtaggaccaacc 20341931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 75 - 350
Target Start/End: Complemental strand, 7494555 - 7494275
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataa 174  Q
    |||||||||||||| |||||| ||  |||||||||||||||||||| |||| || ||||| |||| ||||||||||  ||||||| |||||||  | |||    
T  7494555 tgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaattagtaagtttatcattctccacagggattaccgttcaacttagtaatcattaa 7494456  T
Q  175 aacttatatcaaaa-gcgaaagtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagatta-tattttgtgattaagatgagta 269  Q
    ||||||| |||||| |||||| ||| |||||||||||| | ||  ||   |||||||| || |||||||||||| ||   |||||||||| |||||| ||    
T  7494455 aacttatttcaaaaggcgaaattaattaaaagtgaataaagttacagggttgaatttctctgcccaatgcaagactaggtttttgtgattcagatgatta 7494356  T
Q  270 acgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgc 350  Q
    || ||||||||  | |||||||||| |||||||| |||||||| | ||||||||||||||| ||||| ||||||| |||||    
T  7494355 acaatgattaggatatccttgaatccccccttcgtctttattggaattatcttttaagaaaccaaacgacttatggggtgc 7494275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 7152157 - 7152077
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttat 181  Q
    ||||||||||||||||||||||||| || |||||||| |||| |||||||||| ||||| ||||||| |||||||||||||    
T  7152157 aaatcgtaacaagtaataaagtagtaagtttatcgtttttcagagggattgtcattcaacttagtaattaataaaacttat 7152077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 7776350 - 7776453
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    |||||| || |||||||||||| ||  ||||| |||||||||| |||||||| || |||||||||| |||||||| |||||||||| ||||||| |||||    
T  7776350 ttgatgaacaaaattagcaagtgcaccaaatcttaacaagtaacaaagtagtaagtttatcgttctccacagggactgtcgttcaacttagtaattaata 7776449  T
Q  174 aaac 177  Q
    ||||    
T  7776450 aaac 7776453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 21544679 - 21544786
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||||||||| || ||| |||||| |||| |||||||| ||||| |||| || || ||    
T  21544679 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttaccgttctccacatggattgtcattcaacttagaaattagta 21544778  T
Q  174 aaacttat 181  Q
    ||||||||    
T  21544779 aaacttat 21544786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 7143639 - 7143532
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    |||||||| ||||||  ||||| ||  ||||||||||||||||||||||||  || ||||||||||||| ||| |||||| |||| || ||||| |||||    
T  7143639 ttgatggatgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagcaagtttatcgttcttcagaggaattgtcattcacttcagtaattaata 7143540  T
Q  174 aaacttat 181  Q
    ||||||||    
T  7143539 aaacttat 7143532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 18494555 - 18494639
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    |||| ||||||||| |||||| ||  ||||||||||||||||||| ||||| || |||| ||||| |||||||||||||||||||    
T  18494555 tgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagggattgtcgttcaa 18494639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 9121052 - 9121127
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaa 176  Q
    ||||||||||||||||||| ||||| || |||||||||| |||| |||||||||||| | || |||| ||||||||    
T  9121052 aaatcgtaacaagtaataaggtagtaagtttatcgttctccacatggattgtcgttcgactttgtaattaataaaa 9121127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 9687085 - 9687224
Alignment:
Q  80 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaactt 179  Q
    |||||||||  |||||  || ||||||||| ||||||||||||||| || |||||||||  ||||   |||||||||||| ||||||  |||||||||||    
T  9687085 gacgaaattgacaagtgtatcaaatcgtaataagtaataaagtagtaagtttatcgttccacacaaaaattgtcgttcaacttagtatttaataaaactt 9687184  T
Q  180 atatcaaaag-cgaaagtaaa-taaaagtgaatagaattg 217  Q
    || | ||| |  ||||||||| ||||| ||||||||||||    
T  9687185 attttaaaggatgaaagtaaagtaaaattgaatagaattg 9687224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 2632581 - 2632523
Alignment:
Q  21 tagtactttttctttgaatttaaagacaaataggatgagaattagagtagttgttgatg 79  Q
    |||||||||||||||| |||||||||| ||||| |||||| |||||| |||||||||||    
T  2632581 tagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatg 2632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 343
Target Start/End: Complemental strand, 316289 - 316164
Alignment:
Q  221 tgaatttcccttcccaatgcaagattatatttt-gtgattaagatgagtaacgatgattagtgtttccttgaat-ctccccttcgcctttattg-aattt 317  Q
    |||||| |||| |||||||||||||||  |||| ||||||||||||| ||||  ||||||  |||||||||||| ||  | ||  | ||||||| |||||    
T  316289 tgaattcccctacccaatgcaagattaggtttttgtgattaagatgattaacagtgattaaggtttccttgaatccttactttgtcttttattgaaattt 316190  T
Q  318 atcttttaagaaatcaaacaacttat 343  Q
    |||||||||||||| |||||||||||    
T  316189 atcttttaagaaattaaacaacttat 316164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 14074547 - 14074464
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||| |||||||| |||||||| |||||    
T  14074547 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcg-tcttcacatggattgtcattcaa 14074464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 14384575 - 14384492
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||| |||||||| |||||||| |||||    
T  14384575 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcg-tcttcacatggattgtcattcaa 14384492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 24469088 - 24469199
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    ||||||||| |||||  ||||| ||| ||||  ||||||||||||| ||||| || |||||||||| |||||  ||| || ||||| ||||||| |||||    
T  24469088 ttgatggacaaaattgacaagtgcatcaaata-taacaagtaataaggtagtaagtttatcgttctccacagaaattttcattcaacttagtaaataata 24469186  T
Q  174 aaacttatatcaa 186  Q
    |||||||| ||||    
T  24469187 aaacttatttcaa 24469199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 24474036 - 24474147
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    ||||||||| |||||  ||||| ||| ||||  ||||||||||||| ||||| || |||||||||| |||||  ||| || ||||| ||||||| |||||    
T  24474036 ttgatggacaaaattgacaagtgcatcaaata-taacaagtaataaggtagtaagtttatcgttctccacagaaattttcattcaacttagtaaataata 24474134  T
Q  174 aaacttatatcaa 186  Q
    |||||||| ||||    
T  24474135 aaacttatttcaa 24474147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 9404664 - 9404734
Alignment:
Q  111 aagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttat 181  Q
    ||||||||||||||| || |||||||| | || | ||||||| |||||| ||||||| |||||||||||||    
T  9404664 aagtaataaagtagtaagtttatcgttttccatacggattgtggttcaacttagtaattaataaaacttat 9404734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 2629827 - 2629922
Alignment:
Q  250 ttttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgccttt-attgaa-tttatcttttaagaaatcaaacaacttat 343  Q
    ||||| |||| |||||| |||||  | |||| ||||||| ||||| |||||||| |||| | |||| |||||||||||||||||||||||| ||||    
T  2629827 ttttgagattcagatgactaacggcggttagggtttcctagaatccccccttcgtctttgactgaaatttatcttttaagaaatcaaacaatttat 2629922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 9071451 - 9071392
Alignment:
Q  80 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 139  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||| || || |||||||    
T  9071451 gacgaaattagcaactgcatcaaatcgtaacaagtaaaaaagtagtaagtttttcgttct 9071392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 20446212 - 20446262
Alignment:
Q  24 tactttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    ||||||||||||| |||| ||||||| || |||||||||||||| ||||||    
T  20446212 tactttttctttgcatttgaagacaattaagatgagaattagaggagttgt 20446262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 2352149 - 2352215
Alignment:
Q  91 caagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||| ||| ||||||||||||||||||||||||| || |||||  ||| |||| ||||||||||||||    
T  2352149 caagtgcatcaaatcgtaacaagtaataaagtagtaag-ttatc-atctccacatggattgtcgttcaa 2352215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 4091345 - 4091429
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttca 158  Q
    |||||| |||||||| ||||||  |  ||||||||||||||||||||||||| || || || || || ||| |||||||| ||||    
T  4091345 ttgatgaacgaaattggcaagtgtaccaaatcgtaacaagtaataaagtagtaagtttttcatttttaacatggattgtcattca 4091429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 114 - 421
Target Start/End: Original strand, 24902647 - 24902959
Alignment:
Q  114 taataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaagtaaataaaagtgaataga 213  Q
    |||||||||||| || |||||||||| | |||| |||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||| ||||||| |    
T  24902647 taataaagtagtaagtttatcgttctccgcaggtattgtcgttcaacttaataattaataaaacttatttcaaaagcgaaagtaaataaaggtgaataaa 24902746  T
Q  214 attgtag---tgaatttcccttcccaatgcaagattatatttt-gtgattaagatgagtaacgatgattagtgtttccttgaatctccc-cttcgccttt 308  Q
    |||| ||   ||||||  | | |||||||||| ||||  |||| |||||| || ||| |||||| |||||  |||||| | |||| ||| ||||| ||||    
T  24902747 attgcagggttgaattgtcatgcccaatgcaatattaggtttttgtgattcaggtgattaacgacgattatggtttccctaaatccccctcttcgtcttt 24902846  T
Q  309 attgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaatcccaactgtaaaacctgcactagtttctttagataacttg 408  Q
    |||||| ||||||||| ||||| |||| |||||||| ||||||||||| |||||||||||| |||| |||||||   |||||||||||||| |||| |||    
T  24902847 attgaaattatctttttagaaaccaaataacttatgcggtgcatcattgatttaatgaatctcaacggtaaaactcacactagtttctttaaataatttg 24902946  T
Q  409 tttagaaccaacc 421  Q
    | |||||||||||    
T  24902947 tgtagaaccaacc 24902959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 353
Target Start/End: Original strand, 12484827 - 12485068
Alignment:
Q  117 taaagtagtcag-attatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaagtaaataaaagtgaatagaat 215  Q
    ||||||||| || |||||||||||  ||| |||||||||||||| | | ||| || |||||||||| |||||||||||||||| ||||||||||||||||    
T  12484827 taaagtagtaagtattatcgttctctacatggattgtcgttcaactcaataattagtaaaacttatttcaaaagcgaaagtaattaaaagtgaatagaat 12484926  T
Q  216 tgta---gtgaatttcccttcccaatgcaagatta-tattttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttatt 311  Q
    || |    | |||| |||| | ||||||| |||||   |||||||||| |||||| |||||   ||||| ||||||||||||| |  ||||  |||||||    
T  12484927 tgcaaggttaaattgccctacacaatgcacgattaggtttttgtgattcagatgattaacggctattagggtttccttgaatcccttcttcatctttatt 12485026  T
Q  312 gaatttatcttttaagaaatcaaacaacttatgtggtgcatc 353  Q
    | | |||||||||||||||| |||||||||||| ||||||||    
T  12485027 ggaattatcttttaagaaataaaacaacttatgcggtgcatc 12485068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 365
Target Start/End: Complemental strand, 30782959 - 30782688
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagat-tatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaagtaaa 199  Q
    |||||| || || |||||||||||| || | ||||||||| ||||| ||||| ||||||| ||| ||| ||| ||||||||| | ||| |  ||||||||    
T  30782959 aaatcgcaataaataataaagtagtaagttgtatcgttctacacagagattgccgttcaacttaataattaacaaaacttattttaaacggaaaagtaaa 30782860  T
Q  200 taaaag-tgaatagaattgtagtg----aatttcccttcccaatgcaagattatattttgtgattaagatgagtaacgatgattagtgtttccttgaatc 294  Q
     ||||| ||| |||||||| || |    |||| | || |||||||| |||||   ||||| |||| |||||| |||||| |||||| ||||||| |||||    
T  30782859 gaaaagatgattagaattgcagggttttaattgctctgcccaatgcgagattgggttttgagattcagatgactaacgacgattagggtttcctagaatc 30782760  T
Q  295 tccccttcgccttt-attga-atttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatg 365  Q
     |||||||| |||| | ||| ||||||||||||||||||||||||| |||| | ||| |||||| ||||||||    
T  30782759 -ccccttcgtctttgaatgatatttatcttttaagaaatcaaacaatttatttcgtgaatcattgatttaatg 30782688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 50048310 - 50048204
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataa 174  Q
    |||||||||||||| |||||| ||| ||||  ||||||||||||||||||| || |||||||||| |||||||| |||||||||| |||  |||||  ||    
T  50048310 tgatggacgaaattggcaagtgcatcaaattataacaagtaataaagtagtaagtttatcgttctccacagggactgtcgttcaacttaacaactagcaa 50048211  T
Q  175 aacttat 181  Q
    |||||||    
T  50048210 aacttat 50048204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 23224697 - 23224582
Alignment:
Q  66 agtagttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagt 165  Q
    |||| ||| |||||| ||||||| |||||| | | ||||||||||||||||||| ||||| || ||||| |||| |||| |||||||||||||| ||||     
T  23224697 agtaattggtgatgggcgaaattggcaagtgcgtcaaatcgtaacaagtaataaggtagtaagtttatcattctccacatggattgtcgttcaacttagc 23224598  T
Q  166 aactaataaaacttat 181  Q
    || ||  |||||||||    
T  23224597 aattagaaaaacttat 23224582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 21451013 - 21451128
Alignment:
Q  250 ttttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgccttt--attgaatttatcttttaagaaatcaaacaacttatgtgg 347  Q
    |||||||||| ||||||  |||||||||||| ||||||||||||| |||||||| ||||  || |||||||||| || |||||| ||||||||||| | |    
T  21451013 ttttgtgattcagatgatgaacgatgattagagtttccttgaatc-ccccttcgtctttgaatggaatttatctcttgagaaattaaacaacttatttcg 21451111  T
Q  348 tgcatcattaatttaatg 365  Q
    || |||||| ||||||||    
T  21451112 tg-atcattgatttaatg 21451128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 34522185 - 34522095
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttag 164  Q
    |||||||| |||||| |||||| ||  |||||||||||||||||||| |||| || |||||||||| |||| ||||||| |||||| ||||    
T  34522185 ttgatggaagaaattggcaagtgcaccaaatcgtaacaagtaataaaatagtaagtttatcgttctccacaaggattgttgttcaaattag 34522095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 27682993 - 27682904
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttag 164  Q
    ||||||||||||||  ||||| ||  ||| ||||||||||||||||||||| || |||| |||||  |||||||||||||||||| ||||    
T  27682993 tgatggacgaaattgacaagtgcaccaaaccgtaacaagtaataaagtagtaagtttattgttctctacagggattgtcgttcaacttag 27682904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 17836791 - 17836901
Alignment:
Q  77 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaa 176  Q
    |||||||||||| |||||| ||  ||||| |||||||||| |||||||| || ||||||||||  ||| |||||  | || || |||| || ||||||||    
T  17836791 atggacgaaattggcaagtgcaccaaatcataacaagtaagaaagtagtaagtttatcgttctcaacaaggatttcctttgaacttagcaattaataaaa 17836890  T
Q  177 cttatatcaaa 187  Q
    |||||||||||    
T  17836891 cttatatcaaa 17836901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 30676729 - 30676620
Alignment:
Q  77 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaa 176  Q
    ||||||||| ||  ||||||||  ||||||||||||||||||||||||| |  |||||||||| || | |||||||||||||| |||| || ||  ||||    
T  30676729 atggacgaacttgacaagttcaccaaatcgtaacaagtaataaagtagtaaatttatcgttctgcata-ggattgtcgttcaacttagcaattagcaaaa 30676631  T
Q  177 cttatatcaaa 187  Q
    ||||| |||||    
T  30676630 cttatttcaaa 30676620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 9329309 - 9329224
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||||||||| |  ||| ||  |||| |||||||||| |||||||||  | |||||||||| |||| ||||||||||||||    
T  9329309 ttgatggacgaaattggagagtacactaaattgtaacaagtattaaagtagtacgtttatcgttctccacacggattgtcgttcaa 9329224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 11768892 - 11768966
Alignment:
Q  84 aaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||| |||||| ||| ||||||||| ||| ||||||||||| || |||||| ||| |||| ||||||||||||||    
T  11768892 aaatttgcaagtgcatcaaatcgtaataaggaataaagtagtaagtttatcg-tctccacatggattgtcgttcaa 11768966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 23420501 - 23420562
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttag 164  Q
    ||||||||||||||||||||||||| || |||||| ||| |||| |||||||||||||| ||||    
T  23420501 aaatcgtaacaagtaataaagtagtaag-ttatcg-tctccacaaggattgtcgttcaacttag 23420562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 12424060 - 12424020
Alignment:
Q  20 ttagtactttttctttgaatttaaagacaaataggatgaga 60  Q
    ||||||||||||||||| |||| |||||||||| |||||||    
T  12424060 ttagtactttttctttgcatttgaagacaaataagatgaga 12424020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24903435 - 24903387
Alignment:
Q  26 ctttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    ||||||||||| |||| |||||||||| |||||||||||| | ||||||    
T  24903435 ctttttctttgcatttgaagacaaatatgatgagaattagtggagttgt 24903387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 77 - 383
Target Start/End: Original strand, 36494 - 36804
Alignment:
Q  77 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaa 176  Q
    |||||||||||| |||||| ||  |||||  |||||||||||||||||| || |||| ||||| |||| |||||||||||||| ||| ||| ||||||||    
T  36494 atggacgaaattggcaagtgcaccaaatcacaacaagtaataaagtagtaagtttattgttctccacaaggattgtcgttcaacttaataattaataaaa 36593  T
Q  177 cttatatcaaaag-cgaaagtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatattttgtgattaagatgagtaacg 272  Q
    ||||| | ||||| ||||||| | |||||||||||||||||| ||   ||||||||| | |||||||||||||||  |||| ||||| |||||| |||||    
T  36594 cttattttaaaagacgaaagtcattaaaagtgaatagaattgcagggttgaatttccttgcccaatgcaagattaggttttttgattcagatgattaacg 36693  T
Q  273 atgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaatccca 372  Q
    | |||||  || ||||| |||| ||  ||   |||||||| | ||||||| |||||||  ||||||||||||||||||||| || ||||||| |||||||    
T  36694 acgattatggtatcctttaatccccatttattctttattggaattatcttataagaaactaaacaacttatgtggtgcatccttgatttaataaatccca 36793  T
Q  373 actgtaaaacc 383  Q
    ||| |||||||    
T  36794 actataaaacc 36804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 81 - 436
Target Start/End: Original strand, 2021 - 2381
Alignment:
Q  81 acgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaactta 180  Q
    |||||||| |||||| ||  |||||||||||| || ||||||||| |  |||||||||| ||  |  |||||||||||| ||||||| | ||||||||||    
T  2021 acgaaattggcaagtgcaccaaatcgtaacaaatattaaagtagtaaatttatcgttctccattgaaattgtcgttcaacttagtaattcataaaactta 2120  T
Q  181 tatcaaaag-cgaaagtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatatttt-gtgattaagatgagtaacgatg 275  Q
    | | ||||| |||||||||  ||||||||||| |  || ||   ||||||||||| |||||| ||||||||  |||| |||||| |||||| ||||   |    
T  2121 ttttaaaaggcgaaagtaataaaaagtgaatatacatggagggttgaatttccctgcccaatacaagattaggtttttgtgattcagatgattaacagag 2220  T
Q  276 attagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaatcccaact 375  Q
    ||||| |||| |||||||| |||||||| |||||||| | |||| |||||||||| |||||||||||||||||||||||||  ||||||||||||||||     
T  2221 attagggttttcttgaatc-ccccttcgtctttattggaattattttttaagaaaccaaacaacttatgtggtgcatcattggtttaatgaatcccaacg 2319  T
Q  376 gtaaaacctgcac-tagtttctttagataacttgtttagaaccaaccatagttatgtactac 436  Q
    |||||||  ||||  |||||||||| ||||||||| ||| |||||||| |||  ||||||||    
T  2320 gtaaaactcgcacgaagtttctttaaataacttgtgtaggaccaaccagagtcgtgtactac 2381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 81 - 436
Target Start/End: Original strand, 2186 - 2546
Alignment:
Q  81 acgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaactta 180  Q
    |||||||| |||||| ||  |||||||||||| || ||||||||| |  |||||||||| ||  |  |||||||||||| ||||||| | ||||||||||    
T  2186 acgaaattggcaagtgcaccaaatcgtaacaaatattaaagtagtaaatttatcgttctccattgaaattgtcgttcaacttagtaattcataaaactta 2285  T
Q  181 tatcaaaag-cgaaagtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatatttt-gtgattaagatgagtaacgatg 275  Q
    | | ||||| |||||||||  ||||||||||| |  || ||   ||||||||||| |||||| ||||||||  |||| |||||| |||||| ||||   |    
T  2286 ttttaaaaggcgaaagtaataaaaagtgaatatacatggagggttgaatttccctgcccaatacaagattaggtttttgtgattcagatgattaacagag 2385  T
Q  276 attagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaatcccaact 375  Q
    ||||| |||| |||||||| |||||||| |||||||| | |||| |||||||||| |||||||||||||||||||||||||  ||||||||||||||||     
T  2386 attagggttttcttgaatc-ccccttcgtctttattggaattattttttaagaaaccaaacaacttatgtggtgcatcattggtttaatgaatcccaacg 2484  T
Q  376 gtaaaacctgcac-tagtttctttagataacttgtttagaaccaaccatagttatgtactac 436  Q
    |||||||  ||||  |||||||||| ||||||||| ||| |||||||| |||  ||||||||    
T  2485 gtaaaactcgcacgaagtttctttaaataacttgtgtaggaccaaccagagtcgtgtactac 2546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 75 - 374
Target Start/End: Complemental strand, 19571112 - 19570809
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataa 174  Q
    |||||||| ||||| |||||| ||  |||||||||||| |||||||||||| || ||||||||||  ||| |||||||| ||||| ||||||| || |||    
T  19571112 tgatggactaaatttgcaagtgcaccaaatcgtaacaaataataaagtagtaagtttatcgttctctacaaggattgtcattcaacttagtaattattaa 19571013  T
Q  175 aacttatatcaaaagcgaaagtaaataaaagtgaatagaattgta---gtgaatttcccttcccaatgcaagatta-tattttgtgattaagatgagtaa 270  Q
    ||||||| ||||| ||||||||||  ||||||||||||||||| |    ||||||  | |||| ||||||||||||   |||||||||| |||||| |||    
T  19571012 aacttatttcaaaggcgaaagtaataaaaagtgaatagaattgcaaggttgaattgtcattccgaatgcaagattaggtttttgtgattcagatgattaa 19570913  T
Q  271 cgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaatcc 370  Q
     ||  ||||  || || ||||||| |||||||| |||||||| | ||||||||||||||| |||| ||||||||||||||  | || || ||||||||||    
T  19570912 tgacaattatggtatctttgaatccccccttcgtctttattggaattatcttttaagaaaccaaagaacttatgtggtgctactttgatgtaatgaatcc 19570813  T
Q  371 caac 374  Q
    ||||    
T  19570812 caac 19570809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 350
Target Start/End: Complemental strand, 22230963 - 22230780
Alignment:
Q  172 taaaacttatatcaaaagcgaaa-gtaaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatatttt-gtgattaagatga 266  Q
    |||||||||| |||||||  ||| ||||||||| ||||||||||||| ||   |||||| | || |||||||||||||||  |||| |||||||||||||    
T  22230963 taaaacttatttcaaaaggaaaaagtaaataaaggtgaatagaattgcagggttgaattgctctgcccaatgcaagattaggtttttgtgattaagatga 22230864  T
Q  267 gtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgc 350  Q
     |||||  |||||| || |||||||||| || || | ||||||||| | ||||||||| |||||||||||||||||||| ||||    
T  22230863 ttaacggcgattagggtatccttgaatccccactgcacctttattggaattatctttttagaaatcaaacaacttatgtagtgc 22230780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 363
Target Start/End: Original strand, 12338892 - 12339129
Alignment:
Q  131 tatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaa-gtaaataaaagtgaatagaattgtagtg---aatt 226  Q
    ||||||||| ||||||||||| ||||||| ||| ||| || ||||| |||| |||| ||||||| ||||| || | |||||||||||| || |   ||||    
T  12338892 tatcgttctccacagggattgccgttcaacttaataattagtaaaatttatttcaagagcgaaaagtaaaaaataatgaatagaattgcagggttaaatt 12338991  T
Q  227 tcccttcccaatgcaagattatattttgtg-attaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatctttta 325  Q
     |||| |||| ||||||||||  |||| |  |||   |||| |||| | |||||| ||||||||||||| ||||||   |||||||||| | ||||||||    
T  12338992 gccctgcccagtgcaagattaggttttttttattcgaatgattaacaacgattagggtttccttgaatcccccctttatctttattgaaatgatctttta 12339091  T
Q  326 agaaatcaaacaacttatgtggtgcatcattaatttaa 363  Q
    |||||| ||||||||||||  |||||||| | ||||||    
T  12339092 agaaataaaacaacttatgcagtgcatcactgatttaa 12339129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 20715900 - 20715756
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    |||||||||||||||  ||||| ||  |||| |||| ||||||||| ||||| || |||||||||| | |||||||||| |||||| ||||||| ||| |    
T  20715900 ttgatggacgaaattgacaagtgcaccaaattgtaataagtaataaggtagtaagtttatcgttctccgcagggattgttgttcaacttagtaattaaaa 20715801  T
Q  174 aaacttatatcaaaagcgaaa-gtaaataaaagtgaatagaattg 217  Q
    |||||| | | ||||  ||||  ||||||||||||||||||||||    
T  20715800 aaacttcttttaaaaatgaaatttaaataaaagtgaatagaattg 20715756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 24843015 - 24842892
Alignment:
Q  77 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaa 176  Q
    |||||||||||  ||||||| |  ||||| ||||||||||||||||||| || |||| |||||  ||| ||||||| |||||| ||||||| ||||||||    
T  24843015 atggacgaaatgggcaagtttactaaatcataacaagtaataaagtagtaagtttatagttctctacaaggattgttgttcaacttagtaattaataaaa 24842916  T
Q  177 cttatatcaaa-agcgaaagtaaa 199  Q
    ||||| ||||| || |||||||||    
T  24842915 cttatttcaaatagtgaaagtaaa 24842892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 17768713 - 17768628
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||||||||| ||||||  |  ||||||||| ||||||||||||||| || |||| ||||| |||||||||||||||||||    
T  17768713 ttgatggacgaaattggcaagtaaaccaaatcgtaagaagtaataaagtagtaagtttattgttctccacagggattgtcgttcaa 17768628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 11273683 - 11273790
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    ||||||||| ||||| |||||| ||| |||| |||||||||||||||||||| || ||||||||||  | | |||||||||||||| |||| || ||  |    
T  11273683 ttgatggacaaaattggcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcgttctcgatatggattgtcgttcaacttagcaattagca 11273782  T
Q  174 aaacttat 181  Q
    ||||||||    
T  11273783 aaacttat 11273790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 18451061 - 18451173
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataa 174  Q
    |||||||||||||| ||||||  |  | |||||||||||||||||||| || || |||||||||| ||||  |||||| |||||| |||| || || |||    
T  18451061 tgatggacgaaattggcaagtggaccagatcgtaacaagtaataaagttgtaagtttatcgttctccacaatgattgttgttcaacttagcaattagtaa 18451160  T
Q  175 aacttatatcaaa 187  Q
    ||||||| |||||    
T  18451161 aacttatttcaaa 18451173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 25682207 - 25682127
Alignment:
Q  79 ggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    |||||||||| |||||| ||  |||||||||||||||||||| |||| |  |||||||||| |||  ||||||| ||||||    
T  25682207 ggacgaaattggcaagtgcactaaatcgtaacaagtaataaaatagtaattttatcgttctccacgtggattgtagttcaa 25682127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 24519014 - 24518964
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 125  Q
    |||||||||||| | ||||||  || |||||||||||||||||||||||||    
T  24519014 tgatggacgaaactggcaagtgtatcaaatcgtaacaagtaataaagtagt 24518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 29196495 - 29196553
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    |||||||||||  |||||||||||| || |||||||||| || ||||||| ||||||||    
T  29196495 aaatcgtaacacataataaagtagttagtttatcgttctccatagggattatcgttcaa 29196553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 30072155 - 30072201
Alignment:
Q  28 ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  30072155 ttttctttggatttgaagacaaataagatgagaattagaggagttgt 30072201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 74 - 370
Target Start/End: Complemental strand, 31000669 - 31000370
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagt-aactaat 172  Q
    ||||||||||||||| |||||| ||| |||| |||||||||||||||||||| || ||||| |||| ||||||||||||||||||| ||||| || ||||    
T  31000669 ttgatggacgaaatttgcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcattctccacagggattgtcgttcaacttagtaaattaat 31000570  T
Q  173 aaaacttatatcaaaa-gcgaaagtaaataaaagtgaatagaattgta---gtgaatttcccttcccaatgcaagatta-tattttgtgattaagatgag 267  Q
    ||||||||| |||||| | |||||||| |  ||||||||||||||| |    |||||| || | ||||||| |||||||   |||||||||| ||||||     
T  31000569 aaaacttatttcaaaaggtgaaagtaatt--aagtgaatagaattgcaaggttgaattgccttgcccaatgtaagattaggtttttgtgattcagatgat 31000472  T
Q  268 taacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaa 367  Q
    ||||   |||||| || |||||||||| | | || |  ||||||| | ||||||||||||||| |||||||| ||||||||||  | |||||||||||||    
T  31000471 taacagcgattagggtatccttgaatc-cacatttgtttttattggaattatcttttaagaaaccaaacaacgtatgtggtgctactttaatttaatgaa 31000373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 407
Target Start/End: Complemental strand, 35709021 - 35708741
Alignment:
Q  131 tatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaa-gtaaataaaagtgaatagaattgta--gtga-att 226  Q
    ||||||| | ||||||| ||||||||||| | | ||| ||| ||||||||| ||||||| |||| |||||||||| ||| |||||||| |  || | |||    
T  35709021 tatcgttttccacagggtttgtcgttcaactcaataattaaaaaaacttatttcaaaagagaaaagtaaataaaaatga-tagaattgcatggttacatt 35708923  T
Q  227 tcccttcccaatgcaagattatatttt-gtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatctttta 325  Q
    ||||| | |||||| ||||||| |||| |||||| |||||| |||||   ||||| ||||||||||||||||| |||  |||||||||| ||||||||||    
T  35708922 tccctgcacaatgctagattatgtttttgtgatttagatgattaacggcaattagagtttccttgaatctccctttcatctttattgaaattatctttta 35708823  T
Q  326 agaaatcaaacaacttatgtggtgcatcattaatttaatgaatcccaactgtaaaacctgcactagtttctttagataactt 407  Q
     ||||  ||||||||||||| || ||||| | ||| ||||  || | || ||||||||  ||||||  ||||||||||||||    
T  35708822 ggaaacaaaacaacttatgtagtacatcactgattcaatgtgtcacgacagtaaaacccacactaggctctttagataactt 35708741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 213
Target Start/End: Original strand, 41256208 - 41256348
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagta-gtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    ||||||||||||||  ||||| ||  |||||||||||| |||||||||| || || |||||||||| |||| |||||||||||||| ||| ||| || ||    
T  41256208 tgatggacgaaattgacaagtgcaccaaatcgtaacaaataataaagtaagtaagtttatcgttctccacatggattgtcgttcaacttaataattagta 41256307  T
Q  174 aaacttatatcaaaagc-gaaagtaaataaaagtgaataga 213  Q
    |||||||| ||||||||  |||||| |||||||||||||||    
T  41256308 aaacttatttcaaaagctaaaagtacataaaagtgaataga 41256348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 365
Target Start/End: Original strand, 16592742 - 16592875
Alignment:
Q  234 ccaatgcaagattatatttt-gtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgccttt-attgaa-tttatcttttaagaaa 330  Q
    ||||||||||||||  |||| |||||| |||||| |||||| |||||| |||| |||||||||||| |||| |||| |||||| ||||||||||||||||    
T  16592742 ccaatgcaagattacgtttttgtgattcagatgattaacgacgattagagttttcttgaatctccc-ttcgtctttgattgaaatttatcttttaagaaa 16592840  T
Q  331 tcaaacaacttatgtggtgcatcattaatttaatg 365  Q
    | ||||||||||| | ||| |||||| ||||||||    
T  16592841 taaaacaacttattttgtggatcattgatttaatg 16592875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 30477725 - 30477800
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaa 176  Q
    ||||||||| || |||||||||||| || ||||||||||||| | |||||||||||||| ||||||| ||||||||    
T  30477725 aaatcgtaataaataataaagtagtaagtttatcgttcttcataaggattgtcgttcaacttagtaattaataaaa 30477800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 405
Target Start/End: Original strand, 41256357 - 41256508
Alignment:
Q  252 ttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgca 351  Q
    |||||||| |||||| |||||| |||||| ||| | || |||| |||||| | |||||||| | |||||||||||||||| ||||| ||||||||||| |    
T  41256357 ttgtgattcagatgattaacgacgattagggttacttt-aatc-cccctttgtctttattggaattatcttttaagaaataaaacagcttatgtggtgaa 41256454  T
Q  352 tcattaatttaatgaatcccaactgtaaaacctgcactagtttctttagataac 405  Q
    | ||| ||||| |||| ||||   |||||| |  |||| |||||||||||||||    
T  41256455 taattgatttagtgaaccccactggtaaaatccacactggtttctttagataac 41256508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 420
Target Start/End: Complemental strand, 1734182 - 1734067
Alignment:
Q  305 ctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaatcccaactgtaaaacctgcactagtttctttagataa 404  Q
    |||||||| | |||||||||| |||| |||| |||||| |||||||||||   |||| ||||| |||||| |||| |||  |||| ||| ||||||||||    
T  1734182 ctttattggaattatcttttatgaaaacaaataacttacgtggtgcatcacatattttatgaaacccaacagtaagacccacactggttcctttagataa 1734083  T
Q  405 cttgtttagaaccaac 420  Q
    ||||| ||| ||||||    
T  1734082 cttgtgtaggaccaac 1734067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 28455128 - 28455233
Alignment:
Q  76 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaa 175  Q
    ||||||||||||| |||||| ||  ||||| ||||||||| ||||||||| || |||| ||||| |||| ||||||| |||||| |   ||| |||||||    
T  28455128 gatggacgaaattggcaagtacaccaaatcataacaagtattaaagtagtaagtttatggttctccacatggattgttgttcaactcgttaattaataaa 28455227  T
Q  176 acttat 181  Q
    ||||||    
T  28455228 acttat 28455233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 25475139 - 25475040
Alignment:
Q  250 ttttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtg 349  Q
    |||||||||| | |||| |||||  ||||| | ||||||||||||  ||||| | |||||||  | |||||||||||||||| |||||||||||| ||||    
T  25475139 ttttgtgattcaaatgattaacggcgattactatttccttgaatccgcccttagtctttattcgaattatcttttaagaaataaaacaacttatgcggtg 25475040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 35707772 - 35707826
Alignment:
Q  20 ttagtactttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    ||||||||||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  35707772 ttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgt 35707826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 343
Target Start/End: Original strand, 18531732 - 18531951
Alignment:
Q  131 tatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcga-aagtaaataaaag-tgaatagaattgtag---tgaat 225  Q
    |||| |||| ||||||||||||||||||| | | ||| ||  ||||||||| | ||||| || |||||| || ||| ||||||||||||||    |||||    
T  18531732 tatcattctccacagggattgtcgttcaactcaataattagcaaaacttattttaaaagtgagaagtaa-tagaagatgaatagaattgtatggttgaat 18531830  T
Q  226 ttcccttcccaatgcaagattatatttt-gtgattaagatgagtaacgatgattagtgtttccttgaatctcccc-ttcgcctttatt--gaatttatct 321  Q
    | || | | |||||||||||||  |||| |||||| |||||| |||| |  ||||| ||||||||||||  |||| |||| ||||| |  ||||||||||    
T  18531831 tgccatgctcaatgcaagattaagtttttgtgattcagatgattaacaacaattag-gtttccttgaattcccccattcgtctttaattggaatttatct 18531929  T
Q  322 tttaagaaatcaaacaacttat 343  Q
    |||||||||| |||||||||||    
T  18531930 tttaagaaataaaacaacttat 18531951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 21505278 - 21505231
Alignment:
Q  27 tttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    |||||||||| |||| |||||||||| ||||||| |||||||||||||    
T  21505278 tttttctttgcatttgaagacaaataagatgagagttagagtagttgt 21505231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 370
Target Start/End: Complemental strand, 27303991 - 27303718
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaag-cgaaagtaaa 199  Q
    ||||||||| ||||||||||||||| || |||||||| |||||| |||||||||||||| ||||||| ||||| ||||||| ||| |||  |||||||||    
T  27303991 aaatcgtaataagtaataaagtagtaagtttatcgtttttcacaaggattgtcgttcaacttagtaattaatacaacttatttcataagatgaaagtaaa 27303892  T
Q  200 taaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatattttgtgattaagatgagtaacgatgattagtgtttccttgaatctc 296  Q
    |||||||||||||||||| ||   | ||||||||   ||| ||||||||||  |||| ||||||| |||| ||||   |||||| |  ||||||||||      
T  27303891 taaaagtgaatagaattgcagggtttaatttcccggtccagtgcaagattaggttttatgattaaaatgattaacatcgattagggaatccttgaatcat 27303792  T
Q  297 cccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgc-atcattaatttaatgaatcc 370  Q
    | ||||| |||||||| | ||||||||||||||| ||||||||||| |||||||  || || |||||||||||||    
T  27303791 ctcttcgtctttattggaattatcttttaagaaa-caaacaacttaagtggtgctttctttgatttaatgaatcc 27303718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 75 - 350
Target Start/End: Complemental strand, 22220009 - 22219732
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataa 174  Q
    ||||||||||||||  ||||| ||  ||||| ||||||||||||||||||| || |||||||||| | ||  ||||||||||||| ||||||| ||||||    
T  22220009 tgatggacgaaattgacaagtgcactaaatcataacaagtaataaagtagtaagtttatcgttctccgcaaagattgtcgttcaacttagtaattaataa 22219910  T
Q  175 aacttatatcaaa-agcgaaagtaa-ataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatattttgtgattaagatgagta 269  Q
    ||||||| ||||| || |||||||| |||||| |||||||||||| ||   |||||| |||| || ||||||||||| |  ||||||||| | || | ||    
T  22219909 aacttatttcaaagagtgaaagtaagataaaattgaatagaattgcagagttgaattgccctgccaaatgcaagatt-tggtttgtgattcaaattatta 22219811  T
Q  270 acgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgc 350  Q
    ||||||||||| |  |||||||||| |||||||| |||| ||| | |||   ||||||||| |||||||| ||||||||||    
T  22219810 acgatgattagggaatccttgaatccccccttcgtctttgttggaattaaactttaagaaa-caaacaac-tatgtggtgc 22219732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 350
Target Start/End: Complemental strand, 51885920 - 51885669
Alignment:
Q  102 aatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaag-cgaaagtaaat 200  Q
    ||||||| |||||||||||||||| || |||| ||||| ||||||||||||||||||| ||| ||| ||||||||||||| |||||||  ||||||||||    
T  51885920 aatcgtatcaagtaataaagtagtaagtttattgttctccacagggattgtcgttcaacttaataattaataaaacttatttcaaaagatgaaagtaaat 51885821  T
Q  201 aaaagtgaataga---attgtagtgaatttcccttcccaatgcaagattatattttgtgattaagatgagtaacgatgattagtgtttccttgaatctcc 297  Q
    |||||||||||||   |  |   | ||||    |  ||||||||||||||   ||||||||| |||||| |||||| |||||| |  |||||||||||||    
T  51885820 aaaagtgaatagaaacaccgggtttaattgttatgtccaatgcaagattaggatttgtgatttagatgattaacgacgattagggaatccttgaatctcc 51885721  T
Q  298 ccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgc 350  Q
     ||||| |||||||  | ||||||||||||||| ||||||||||||| |||||    
T  51885720 acttcgtctttattagaattatcttttaagaaa-caaacaacttatgcggtgc 51885669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 280
Target Start/End: Original strand, 12840697 - 12840907
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    ||||||||||||||| |||||| ||   |||||||||||||| ||||||||| || |||||||||  |||| | ||| | |||||| ||||||| |||||    
T  12840697 ttgatggacgaaattggcaagtgcactgaatcgtaacaagtattaaagtagtaagtttatcgttcgccacatgcattctagttcaacttagtaattaata 12840796  T
Q  174 aaacttatatcaaaag-cgaaag-taaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatattttgtgattaagatgagt 268  Q
    |||||||| ||||||| |||||| | ||||||||||||||||||||| |   |||||| |||  ||||||||||||||| | ||||||||| |||||| |    
T  12840797 aaacttatttcaaaagacgaaagtttaataaaagtgaatagaattgttgggttgaattgcccggcccaatgcaagatta-agtttgtgattcagatgatt 12840895  T
Q  269 aacgatgattag 280  Q
    |||| |||||||    
T  12840896 aacggtgattag 12840907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 47023552 - 47023734
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaact----a 170  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||||| ||||| || ||||| |||||||||| ||||||||||||| ||||||| |    |    
T  47023552 tgatgaacgaaattggcaagtacatcaaatcgtaacaagtaataaggtagtaagtttatctttcttcacagagattgtcgttcaacttagtaattaatca 47023651  T
Q  171 ataaaacttatatcaaa-agcgaaagtaaa-taaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattat 248  Q
    ||||||||||| ||||| || |||| |||| || || |||||||||||| ||   ||||||| ||| ||||||||||||||||    
T  47023652 ataaaacttatttcaaagagtgaaaataaactagaattgaatagaattgcagggttgaattttcctgcccaatgcaagattat 47023734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 24580047 - 24579965
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatat 183  Q
    ||||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||| || ||||||||||||    
T  24580047 aaatcgtaacaagtaataaagtagttagtttatcgttctccacaaggattgtcgttcaatttagtaattattaaaacttatat 24579965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 12805794 - 12805893
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaa-agcgaaagtaaa 199  Q
    ||||||||||||||||||||||||| || ||||| |||| |||| |||||||||||||||||||| | ||||||||||||| ||||| || |||||||||    
T  12805794 aaatcgtaacaagtaataaagtagtaagtttatcattctccacaaggattgtcgttcaatttagtgattaataaaacttatttcaaatagtgaaagtaaa 12805893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 10450301 - 10450404
Alignment:
Q  78 tggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaac 177  Q
    |||| |||||| |||||| ||  |||||||||||| |||||||||||| || ||| ||||||  ||||| | |||||||||| ||||||| |||||||||    
T  10450301 tggatgaaattggcaagtgcaccaaatcgtaacaaataataaagtagtaagtttagcgttctctacaggaaatgtcgttcaacttagtaaataataaaac 10450400  T
Q  178 ttat 181  Q
    ||||    
T  10450401 ttat 10450404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 13553462 - 13553601
Alignment:
Q  80 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaactt 179  Q
    |||||||||  |||||  || ||||||||| ||||||||||||||| || |||||||||  ||||   |||||||||||| ||||||  |||||||||||    
T  13553462 gacgaaattgacaagtgtatcaaatcgtaataagtaataaagtagtaagtttatcgttccacacaaaaattgtcgttcaacttagtatttaataaaactt 13553561  T
Q  180 atatcaaaag-cgaaagtaaa-taaaagtgaatagaattg 217  Q
    || | ||| |  ||||||||| ||||| ||||||||||||    
T  13553562 attttaaaggatgaaagtaaagtaaaattgaatagaattg 13553601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 9781922 - 9782030
Alignment:
Q  108 aacaagtaataaagtagtcagat-tatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaa-gtaaataaaag 205  Q
    |||||||||||||||||| ||   ||||||||| || || |||||| |||||| | | ||| || |||||||||| ||||||| |||| |||||||||||    
T  9781922 aacaagtaataaagtagtaagtgatatcgttctccatagagattgttgttcaactcaataattagtaaaacttatttcaaaagtgaaaagtaaataaaag 9782021  T
Q  206 tgaatagaa 214  Q
    |||||||||    
T  9782022 tgaatagaa 9782030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 20718004 - 20717941
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgtt 137  Q
    ||||| ||||||||| |||||| ||  ||||||||||||||||||||||||| || ||||||||    
T  20718004 ttgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgtt 20717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 30797754 - 30797703
Alignment:
Q  85 aattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 136  Q
    |||| |||||| ||| ||||||||||||||||||||||||| || |||||||    
T  30797754 aattggcaagtgcatcaaatcgtaacaagtaataaagtagtaagtttatcgt 30797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 9782144 - 9782189
Alignment:
Q  318 atcttttaagaaatcaaacaacttatgtggtgcatcattaatttaa 363  Q
    |||||||||||||| |||||||||||| ||||||||| | ||||||    
T  9782144 atcttttaagaaataaaacaacttatgaggtgcatcactgatttaa 9782189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 250 - 418
Target Start/End: Complemental strand, 26853505 - 26853338
Alignment:
Q  250 ttttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtg 349  Q
    |||||||||| |||||| |||||| |||||| |||||| |||||| |||  ||  |||||||| | ||||||||||||||| ||||||||||||| ||||    
T  26853505 ttttgtgattcagatgattaacgacgattagggtttccctgaatc-ccctgtcatctttattggaattatcttttaagaaaacaaacaacttatgcggtg 26853407  T
Q  350 catcattaatttaatgaatcccaactgtaaaacctgcactagtttctttagataacttgtttagaacca 418  Q
    |||||||| |||||||||||||||| ||||||||  ||||||||||| || ||||||||| ||| ||||    
T  26853406 catcattattttaatgaatcccaacagtaaaacccacactagtttctgtaaataacttgtgtaggacca 26853338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 76 - 346
Target Start/End: Complemental strand, 13305721 - 13305448
Alignment:
Q  76 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaa 175  Q
    ||||||||||||| |||||| |   |||| |||||||||||||||||||| || ||||||||||  ||| |||||||||||||| ||||||| |||||||    
T  13305721 gatggacgaaattggcaagtgcgcaaaattgtaacaagtaataaagtagttagtttatcgttctctacatggattgtcgttcaacttagtaattaataaa 13305622  T
Q  176 acttatatcaaaag-cgaaagtaaataaaagtgaatagaattgta---gtgaatttcccttcccaatgcaagattatattttgtgattaagatgagtaac 271  Q
      |||| |||||||  ||||||||||||||||||||||||||| |    | |||| || |  |||||| |||||||  |||||||||| ||||||  ||     
T  13305621 gtttatttcaaaagatgaaagtaaataaaagtgaatagaattgcatggttaaattgccatgtccaatggaagattaggttttgtgattcagatgatcaat 13305522  T
Q  272 gatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtg 346  Q
    |   ||||| |  ||||||||||||||||||| || ||||| | ||||||||||| |||| ||||||| ||||||    
T  13305521 ggcaattagggaatccttgaatctccccttcgtctctattggaattatcttttaataaat-aaacaacatatgtg 13305448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 308
Target Start/End: Original strand, 28900132 - 28900364
Alignment:
Q  76 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaa 175  Q
    |||| ||||||||  ||||| ||  |||| ||||||||||||||||||||    |||||||||||||||| ||||||||||||| ||||||| ||| |||    
T  28900132 gatgaacgaaattgacaagtacaccaaattgtaacaagtaataaagtagt----ttatcgttcttcacagagattgtcgttcaacttagtaattaacaaa 28900227  T
Q  176 acttatatca-aaagcgaaagta-aataaaagtgaatagaattgta---gtgaatttcccttcccaatgcaagattatattttgtgattaagatgagtaa 270  Q
    |||||| ||| |  | ||||||| ||||||| | |||||||||  |    | |||||||||||||||||||||||||   || |||||| |||| | |||    
T  28900228 acttatttcacagggtgaaagtataataaaatttaatagaattacaaggttaaatttcccttcccaatgcaagatta-ggttggtgattcagattattaa 28900326  T
Q  271 cgatgattagtgtttccttgaatctccccttcgccttt 308  Q
    || ||||||| |  ||||||||||||||||||| ||||    
T  28900327 cggtgattagggaatccttgaatctccccttcgtcttt 28900364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 26853646 - 26853570
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa-tttagtaactaataaaa 176  Q
    ||||||||||||||||||||||||| || | |||||||| ||||||||| ||||||||| | |||||| ||||||||    
T  26853646 aaatcgtaacaagtaataaagtagtaagttcatcgttctccacagggatagtcgttcaactatagtaattaataaaa 26853570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 12957621 - 12957529
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaa 167  Q
    |||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||| ||| ||||  | || ||||||||||||||||    
T  12957621 ttgatggacgaaattgacaagtgcactaaatcgtaacaagtaataaagtagtaagcttatcg-tctccacattggttttcgttcaatttagtaa 12957529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 13082083 - 13082029
Alignment:
Q  20 ttagtactttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    ||||||||||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  13082083 ttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgt 13082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 26883369 - 26883253
Alignment:
Q  250 ttttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgccttt-attgaa-tttatcttttaagaaatcaaacaacttatgtgg 347  Q
    |||||||||| |||||| ||| ||  ||||  ||||||||||||| |||||||| |||| |||||| ||||||||| ||||||  ||||||||||| | |    
T  26883369 ttttgtgattcagatgattaatgacaattaaggtttccttgaatc-ccccttcggctttgattgaaatttatctttaaagaaacaaaacaacttattttg 26883271  T
Q  348 tgcatcattaatttaatg 365  Q
    || |||||| ||||||||    
T  26883270 tggatcattgatttaatg 26883253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 32240511 - 32240446
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 139  Q
    ||||||||| ||||| |||||| ||  |||| |||||||||||||||||||| || ||||||||||    
T  32240511 ttgatggacaaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaagtttatcgttct 32240446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 350
Target Start/End: Original strand, 11307704 - 11307907
Alignment:
Q  149 ttgtcgttcaatttagtaactaataaaacttatatcaaa-agcgaaagt-aaataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaag 243  Q
    ||||||||||| ||| ||| ||||||||||||| ||||| |  |||||| ||||| || |||||||||||| ||   ||||||  ||| |||||| ||||    
T  11307704 ttgtcgttcaacttaataattaataaaacttatttcaaacaatgaaagtaaaatagaattgaatagaattgcagggttgaattgtcctgcccaatacaag 11307803  T
Q  244 attatattttgtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttat 343  Q
    |||| | ||||||||| |||||| |||   ||||||| |  ||||| ||||||||||||| |||| ||| | |||   ||||||||| |||||||| |||    
T  11307804 attaga-tttgtgattcagatgattaatagtgattagagaatccttaaatctccccttcgtctttgttggaattaaactttaagaaa-caaacaac-tat 11307900  T
Q  344 gtggtgc 350  Q
    |||||||    
T  11307901 gtggtgc 11307907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 13803096 - 13803147
Alignment:
Q  74 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 125  Q
    |||||||||||||||  ||||| ||| |||||||||||||||||||| ||||    
T  13803096 ttgatggacgaaattgacaagtgcatcaaatcgtaacaagtaataaaatagt 13803147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 16054263 - 16054317
Alignment:
Q  20 ttagtactttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    ||||||||||||||||| |||| |||||||||| ||| ||| |||||| ||||||    
T  16054263 ttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgt 16054317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 29047462 - 29047408
Alignment:
Q  20 ttagtactttttctttgaatttaaagacaaataggatgagaattagagtagttgt 74  Q
    ||||||||||||||||| |||| || ||||||| ||||||| |||||| ||||||    
T  29047462 ttagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgt 29047408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 409
Target Start/End: Original strand, 14541073 - 14541413
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagat-tatcgttcttcacagggattgtcgttcaatttagtaactaata 173  Q
    |||||||||||||| |||||| ||  ||||  ||| |||||||||| |||| || | ||||||||| ||| | ||||||||||||| | | ||  || ||    
T  14541073 tgatggacgaaattggcaagtacaccaaataataataagtaataaaatagtaagttgtatcgttctccactgagattgtcgttcaactcaatagttagta 14541172  T
Q  174 aaacttatatcaaaagcgaaagt-aaataaaagtgaatagaattgtagtg---aatttcccttcccaatgcaagatta--tattttgtgattaagatgag 267  Q
    |||||||| | ||||| |||| | |||||||  | |||||||||| || |   ||||  | | |||||||||||| ||  | |||||||||| ||||||     
T  14541173 aaacttattttaaaagtgaaaattaaataaagattaatagaattgcagagttaaattgtcatgcccaatgcaagaataagttttttgtgatttagatgat 14541272  T
Q  268 taacgatgattagtgtttccttgaatctccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcatcattaatttaatgaa 367  Q
    ||||| ||||||| ||||||||||||||| |||||| |||||||| | |||||||||| ||||| ||| ||||||||   || |||||| |||||||| |    
T  14541273 taacggtgattag-gtttccttgaatctctccttcgtctttattggaattatcttttacgaaataaaaaaacttatgcaatgtatcattgatttaatgta 14541371  T
Q  368 tcccaactgtaaaacctgcactagtttctttagataacttgt 409  Q
    || | || || |||||  |||||   ||||||||||||||||    
T  14541372 tcacgacggtcaaacccacactacagtctttagataacttgt 14541413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 10343064 - 10342963
Alignment:
Q  80 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaactt 179  Q
    |||||||||||||||| ||  |||||||||| ||||||||| |||| || |||||||||| |||| |||||| ||||||| |||| || ||  |||||||    
T  10343064 gacgaaattagcaagtgcacaaaatcgtaacgagtaataaaatagtaagtttatcgttctccacaaggattgccgttcaacttagcaattagcaaaactt 10342965  T
Q  180 at 181  Q
    ||    
T  10342964 at 10342963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 343
Target Start/End: Complemental strand, 25884295 - 25884170
Alignment:
Q  221 tgaatttcccttcccaatgcaagattatatttt-gtgattaagatgagtaacgatgattagtgtttccttgaatctccccttcgccttt-attgaa-ttt 317  Q
    ||||||||||| |||||||||||||||  |||| | |||| |||| | ||| | ||||||| ||||||||||||| |||||| | |||| | |||| |||    
T  25884295 tgaatttccctacccaatgcaagattaggtttttgcgattcagataattaatggtgattagagtttccttgaatcccccctttgtctttgactgaaattt 25884196  T
Q  318 atcttttaagaaatcaaacaacttat 343  Q
    | |||||||||||| |||||||||||    
T  25884195 accttttaagaaataaaacaacttat 25884170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 2728473 - 2728539
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaa 167  Q
    ||||||||||||  || |||||||| || |||||||||| |||| |||||||||||||| |||||||    
T  2728473 aaatcgtaacaataaacaaagtagtaagtttatcgttctccacaaggattgtcgttcaacttagtaa 2728539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 25918112 - 25918191
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttat 181  Q
    |||| |||||||||||||| ||||| || ||||||| ||||| |||||||||||||||| |||| || ||  |||||||||    
T  25918112 aaattgtaacaagtaataacgtagtaagtttatcgt-cttcatagggattgtcgttcaacttagaaattagcaaaacttat 25918191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 18066931 - 18066857
Alignment:
Q  106 gtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttat 181  Q
    |||||||||||||||||||| |  |||||||||| || ||||||||||| |||| ||||| | || ||||||||||    
T  18066931 gtaacaagtaataaagtagtaaatttatcgttctccatagggattgtcg-tcaacttagttattagtaaaacttat 18066857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 33913400 - 33913499
Alignment:
Q  78 tggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaac 177  Q
    ||||||||||| |||||| ||  |||| |||||||||||||||||||| |  ||||||||||  | | ||||||||||| || |||| || || ||||||    
T  33913400 tggacgaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaaatttatcgttctctatatggattgtcgtttaacttagcaattagtaaaac 33913499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 370
Target Start/End: Complemental strand, 9997 - 9726
Alignment:
Q  101 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttatatcaaaagcgaaag--taa 198  Q
    ||||||||||||||||||||||||| |  |||||||| |  ||||| ||||   ||||||||||||| ||| ||||||||| |||||||  |||   |||    
T  9997 aaatcgtaacaagtaataaagtagtaaatttatcgttttctacaggtattgctattcaatttagtaattaa-aaaacttatttcaaaaggcaaaaattaa 9899  T
Q  199 ataaaagtgaatagaattgtag---tgaatttcccttcccaatgcaagattatattttgtgattaagatgagtaacgatgattagtgtttccttgaatct 295  Q
    ||||||||||||||||||| ||   ||||||  | | | |||||||||||||  |||  ||||| |||||  ||||| |||||||    ||| |||||      
T  9898 ataaaagtgaatagaattgcagggttgaattatc-tgctcaatgcaagattaggttta-tgattcagatggttaacggtgattaggaaatccatgaatac 9801  T
Q  296 ccccttcgcctttattgaatttatcttttaagaaatcaaacaacttatgtggtgcat-cattaatttaatgaatcc 370  Q
    |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| | | || |||||||||||||    
T  9800 ccccttcgtctttattgaatttatcttttaagaaa-caaacagcttatgtggtgcttactttgatttaatgaatcc 9726  T

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Target: scaffold0171 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 7421 - 7337
Alignment:
Q  75 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaa 159  Q
    ||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||||||| |||||| ||| ||||||||    
T  7421 tgatggacgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgttctccacaggtattatcgttcaa 7337  T

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Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 22624 - 22527
Alignment:
Q  83 gaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttat 181  Q
    |||||| |||||| ||| | || |||||||||||||||||||| |  |||| | |||||| ||| ||||||||||||||||| || ||  |||||||||    
T  22624 gaaattggcaagtgcatcatattgtaacaagtaataaagtagtaaatttattg-tcttcataggaattgtcgttcaatttagcaattagaaaaacttat 22527  T

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Target: scaffold0108 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 9953 - 9857
Alignment:
Q  85 aattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagggattgtcgttcaatttagtaactaataaaacttat 181  Q
    |||| |||||| ||| |||| |||||||||||||||||||| ||   ||| |||| || |||||||||| |||||  |||||| |||||||||||||    
T  9953 aattcgcaagtgcatcaaattgtaacaagtaataaagtagtaagtcgatcattctccatagggattgtctttcaacctagtaattaataaaacttat 9857  T

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