View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_low_29 (Length: 431)

Name: NF15932_low_29
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_low_29
NF15932_low_29
[»] chr3 (8 HSPs)
chr3 (14-415)||(44784081-44784482)
chr3 (242-359)||(44797855-44797972)
chr3 (241-295)||(44792966-44793020)
chr3 (83-154)||(44797719-44797790)
chr3 (72-154)||(44801102-44801184)
chr3 (242-278)||(44801250-44801286)
chr3 (18-64)||(44786931-44786977)
chr3 (241-293)||(44787149-44787201)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 44784081 - 44784482
Alignment:
Q  14 atgaacataggcagcatccaagcatgagacgttgatctcgacagaaactccaccggtgggaattgcaactccgcctaccatatccaccagactagcaatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44784081 atgaacataggcagcatccaagcatgagacgttgatctcgacagaaactccaccggtgggaattgcaactccgcctaccatatccaccagactagcaatg 44784180  T
Q  114 acaccaccttgcaagtacttacctgaattctgcgagttaatacataaaattaggtaaatcaagaagaacaaaactagtgttattatatgagaaagggaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44784181 acaccaccttgcaagtacttacctgaattctgcgagttaatgcataaaattaggtgaatcaagaagaacaaaactagtgttattatatgagaaagggaag 44784280  T
Q  214 aaaattgaagagagtatgatatgatatatacgaacgagtaaacgtggaggtatcttcattgagaagacaatacggccaggttgtaagagatccaggcgca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44784281 aaaattgaagagagtatgatatgatatatacgaacgagtaaacgtggaggtatcttcattgagaagacaatacagccaggttgtaagagatccaggcgca 44784380  T
Q  314 ggccatgacagattagatgttccaaaaacttaggaggcaatgcatctaacgttgatgctgtttttcctcttttctccaagtaattcttcactgatctcaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44784381 ggccatgacagattagatgttccaaaaacttaggaggcaatgcatctaacgttgatgctgtttttcctcttttctccaagtaattcttcactgatctcaa 44784480  T
Q  414 ct 415  Q
    ||    
T  44784481 ct 44784482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 44797855 - 44797972
Alignment:
Q  242 tacgaacgagtaaacgtggaggtatcttcattgagaagacaatacggccaggttgtaagagatccaggcgcaggccatgacagattagatgttccaaaaa 341  Q
    ||||||||||||||||||| ||||| |||||||||||||| | ||| |||||||  | ||||||||  |||||| |  |  |||||||||||| ||||||    
T  44797855 tacgaacgagtaaacgtgggggtatgttcattgagaagacgacacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagatgttgcaaaaa 44797954  T
Q  342 cttaggaggcaatgcatc 359  Q
    ||| ||||| ||| ||||    
T  44797955 ctttggaggaaattcatc 44797972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 44792966 - 44793020
Alignment:
Q  241 atacgaacgagtaaacgtggaggtatcttcattgagaagacaatacggccaggtt 295  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||| |||||||    
T  44792966 atacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgaccaggtt 44793020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 44797719 - 44797790
Alignment:
Q  83 tccgcctaccatatccaccagactagcaatgacaccaccttgcaagtacttacctgaattctgcgagttaat 154  Q
    ||||||| | |||||||||||| |||  ||  ||||||| |||||||||||||||||||||||||| |||||    
T  44797719 tccgcctgcgatatccaccagagtagtgatagcaccaccgtgcaagtacttacctgaattctgcgaattaat 44797790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 44801102 - 44801184
Alignment:
Q  72 ggaattgcaactccgcctaccatatccaccagactagcaatgacaccaccttgcaagtacttacctgaattctgcgagttaat 154  Q
    |||||||||| | | ||||||| |||||||||| || ||||  ||||| | ||||||| ||||||||||||||||| ||||||    
T  44801102 ggaattgcaattgctcctaccacatccaccagagtaacaatagcaccaacgtgcaagtgcttacctgaattctgcgtgttaat 44801184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 44801250 - 44801286
Alignment:
Q  242 tacgaacgagtaaacgtggaggtatcttcattgagaa 278  Q
    ||||||||||||||||||||||||| |||||||||||    
T  44801250 tacgaacgagtaaacgtggaggtatgttcattgagaa 44801286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 44786931 - 44786977
Alignment:
Q  18 acataggcagcatccaagcatgagacgttgatctcgacagaaactcc 64  Q
    ||||| ||||||||||||||||| || ||||||||||| ||||||||    
T  44786931 acatatgcagcatccaagcatgatacattgatctcgactgaaactcc 44786977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 44787149 - 44787201
Alignment:
Q  241 atacgaacgagtaaacgtggaggtatcttcattgagaagacaatacggccagg 293  Q
    |||||||| ||||||   |||||||||||||||||||| || |||||||||||    
T  44787149 atacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccagg 44787201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University