View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_3 (Length: 646)
Name: NF15932_low_3
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 10 - 628
Target Start/End: Original strand, 43624865 - 43625472
Alignment:
| Q |
10 |
gtgagatgaagaatttcatgctatgaaaagggaaacaattatacaacctaaagaaattggagcttgtagttccatgtgtccacctcccaacaaagttaaa |
109 |
Q |
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| T |
43624865 |
gtgaaatgaagaatttcatgctatgaaaagggaaacaattatacaacctaaagaaattggagcttgtagttccatgtgtccacctcccaacaaagttaaa |
43624964 |
T |
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| Q |
110 |
accaaaggatgagtgaagaaggataaaggcaagggaccaaagggatatgatgtgtaccgtggatcctttatattgggggtatgttgacagtgaatattct |
209 |
Q |
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| T |
43624965 |
accaaaggatgagtgaagaaggataaaggcaagggaccagagggatatgatgtgtaccgt-gatccttcatattgggggcatgttgacactgaatattct |
43625063 |
T |
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| Q |
210 |
gactttcagggatcgtcagaagaggctgtgtacacaatcatgcaggtgttataccccgcgtgagttgctgatttgtgatccccaatttcagattatgaag |
309 |
Q |
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| T |
43625064 |
gactctcagggatcgtc-gaagaggctatgtacacaatcatgcaggtgttataccccgcgtaagttgctgatttgtgatccccaatttcaggttatgaag |
43625162 |
T |
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| Q |
310 |
acacaatttgacattaaaaataacatgtggtggacattaatacgacgaaatagaaataaatcaataatatagaacttaaccccaagtaacgtaagttata |
409 |
Q |
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| T |
43625163 |
acacaatttgacattaaaaataacatgtggtggacattaatacgacgaaataga--------aataatatagaacttaaccccaagtaacgtaagttata |
43625254 |
T |
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| Q |
410 |
tcgtaacaactgtgaataacatgaacagattgggagtgaattaagaaagttcacttcctaatacatagaattagataatggtaattccaataaggcacta |
509 |
Q |
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| T |
43625255 |
tcgtaacaactgtgaataacatgaacagattgggagtgaattaagaaagttcacttcctaatacatagaattagataatggt-attccaataaggcacta |
43625353 |
T |
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| Q |
510 |
tgaatgtcaattatagaagattcaactcactttctagtctgtttcttttcttattgagtcaacaaaaagttgaaaaagaaagtaacagataggatttagg |
609 |
Q |
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| T |
43625354 |
tgaatgtcaattatagaagattcaactcactttctagtctgtttcttttcttattgagtcaacaaaaagttgaaaaagaaagtaacagataggatttagg |
43625453 |
T |
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| Q |
610 |
aaagactagcagccaaaat |
628 |
Q |
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| T |
43625454 |
aaagactagcagccaaaat |
43625472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 26413139 - 26413187
Alignment:
| Q |
23 |
tttcatgctatgaaaagggaaacaattatacaacctaaagaaattggag |
71 |
Q |
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| T |
26413139 |
tttcatgctatgaaaagggaaacaattatacaacctaaagaaattggag |
26413187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 482 - 628
Target Start/End: Complemental strand, 35901286 - 35901138
Alignment:
| Q |
482 |
agataatggtaattccaataaggcactatgaatgtcaattatagaagattcaactcactttctagtctgtttcttttcttattgagtcaacaaaaagttg |
581 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| |
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| T |
35901286 |
agatcatggtaattccaataaggcactatgaatgttaattatagaagattcaactcactttctagtatgtgcctttttctattgagtcagaaaaaagttg |
35901187 |
T |
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| Q |
582 |
aaaaagaaagtaacagataggatttag--gaaagactagcagccaaaat |
628 |
Q |
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| T |
35901186 |
aaaaagaaagtaacagataggatttaggagaaagactagcagccaaaat |
35901138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 35901352 - 35901290
Alignment:
| Q |
372 |
aataatatagaacttaaccccaagtaacgtaagttatatcgtaacaactgtgaataacatgaa |
434 |
Q |
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| T |
35901352 |
aataatatagaacttaaccccaagtaaagtaagttatatcgtaacaactgtgaataacatgaa |
35901290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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