View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_low_30 (Length: 424)
Name: NF15932_low_30
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_30 |
 | |
|
| [»] chr4 (14 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 79 - 424
Target Start/End: Original strand, 3800482 - 3800827
Alignment:
| Q |
79 |
ataacaagattctctgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagccctt |
178 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
3800482 |
ataacaagattctttgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttggaaaagattgaagccctt |
3800581 |
T |
|
| Q |
179 |
gaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatga |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
3800582 |
gaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaagttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatga |
3800681 |
T |
|
| Q |
279 |
tgacaagtctacacgtatgcttctaatagcatcagtaccctaccattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataac |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3800682 |
tgacaagtctacacgtatgcttctaatagcatcagtaccctaccattaacgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataac |
3800781 |
T |
|
| Q |
379 |
atatgttatctgaaatagccaaatattttttaccttgtcatttttc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800782 |
atatgttatctgaaatagccaaatattttttaccttgtcatttttc |
3800827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 4001125 - 4001495
Alignment:
| Q |
16 |
acatattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||| |||||| |||| ||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
4001125 |
acatattcaattacctgcactccacaccaaagattttccactcgactatgtgaaaagtccaatataacaagattctttccagaaaacttctttgggaatg |
4001224 |
T |
|
| Q |
116 |
attttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatc |
215 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4001225 |
attttagagggtaatgtatccaacaaatatatcttagatcagttgggaaagattgaagcccttgaggaagaagttccaaatcgtatttaccaatgaaatc |
4001324 |
T |
|
| Q |
216 |
caaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcagta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4001325 |
caaatatcgcaggttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatgatgacaagtctacacgtatgcttctaatagcatcagta |
4001424 |
T |
|
| Q |
316 |
ccctaccattaatgtaaaagaaaaatttc-aatcattgaaagccatatttttaaccaaaataacatatgtt |
385 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4001425 |
ccctaccattaatgtaaaagaaaaattacaaatcattgaaagccatatttttaaccaaaatgacatatgtt |
4001495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 4217450 - 4217829
Alignment:
| Q |
16 |
acatattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatg |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4217450 |
acatattcaattacctgtactccacaccaaagcttttccactttactataacgcaagttcaatataacaagattctctgcagaaaagttctctgggaatg |
4217549 |
T |
|
| Q |
116 |
attttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaa---------atcgtatttacc |
206 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||| ||| |
|
|
| T |
4217550 |
attttagagggtaacatacccaacgaagatatcttagatcatttggaaaagattgaagccctcgaggaagaagatccaaacagtcattatcgtacccacc |
4217649 |
T |
|
| Q |
207 |
atgaaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaata |
306 |
Q |
| |
|
| ||||| |||| || |||||||||||||||||||||||||||||||||||||| || | || || ||||||||||| ||||||||||||||||||| |
|
|
| T |
4217650 |
aaaaaaattcaaaaatttcaggttggtcatcttagcaaatacatgagggcttaacttcagcatccaaactgatgacaagtttacacgtatgcttctaata |
4217749 |
T |
|
| Q |
307 |
gcatcagtaccctaccattaatgtaaaagaaaaatttc-aatcattgaaagccatatttttaaccaaaataacatatgtt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
4217750 |
gcatcagtaccctaccattaatgtaaaagaaaaattacaaatcattgaaagccaaatttgtaaccaaaatgacatatgtt |
4217829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 3985819 - 3986199
Alignment:
| Q |
16 |
acatattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| | ||||| ||||| |||||||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
3985819 |
acatattcaattacctgtactccacaccaaagcttttctactaggctatacgacaagtccaatataacaagtttctctgcagaaaacttctttggcaatg |
3985918 |
T |
|
| Q |
116 |
attttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaa---------atcgtatttacc |
206 |
Q |
| |
|
| | |||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| || ||| ||| |
|
|
| T |
3985919 |
actctagagggtaatgtacccaatgaagatatcttagatcagttggaaaaggttgaagcccttgaggaagaagatccaaacaatcatgattgtacccacc |
3986018 |
T |
|
| Q |
207 |
atgaaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaata |
306 |
Q |
| |
|
|| |||||||||| || |||||| ||||||||||||||||||| ||||||||||| || || ||||| || |||||||| || || ||||||||||||| |
|
|
| T |
3986019 |
ataaaaatccaaaaatttcaggttcgtcatcttagcaaatacatcagggcttaacttcagcttcctaattgctgacaagtttagacatatgcttctaata |
3986118 |
T |
|
| Q |
307 |
gcatcagtaccctaccattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataacatatgttat |
387 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||| | | |||||||||||| || ||||| ||||||||||||| ||||||| |
|
|
| T |
3986119 |
gcatcagtaccctgtcatgaatggaaaagaaaattctaaatcattgaaagacacattttaaaccaaaataacaaatgttat |
3986199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 4008832 - 4009164
Alignment:
| Q |
16 |
acatattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatg |
115 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||| ||||| ||| | ||||| ||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
4008832 |
acatagtcaattaccttcactccataccaaagcttttctacttggctaaatgacaagtcaaatataacaagattctccgcagaaaacttctttggcaatg |
4008931 |
T |
|
| Q |
116 |
attttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaa---------tcgtatttacc |
206 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||| |||||||| |||||| |||| |||||| ||| |||||| | || | ||| |
|
|
| T |
4008932 |
attttagagggtaactcatccaagaaatatatcttagatcagttggaaaagattgaatccctcgaggaaaaagatccaaacattcttgatagtttccacc |
4009031 |
T |
|
| Q |
207 |
atgaaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaata |
306 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || || ||| | | |||||||||||||||||||||||||||| |
|
|
| T |
4009032 |
atgaaaatccaaaaatagcaggttggtcatcttagcaaatacatgagggcttaacttcagcttcctgatcgctgacaagtctacacgtatgcttctaata |
4009131 |
T |
|
| Q |
307 |
gcatcagtaccctaccattaatgtaaaagaaaa |
339 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |
|
|
| T |
4009132 |
acatcagtgccctgccattaatgtaaaagaaaa |
4009164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 3934254 - 3933925
Alignment:
| Q |
16 |
acatattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatg |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| | ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3934254 |
acatattcaattacctgtactccacaccatagcttttccattcgactaagatacaagtccaatataacaagattctctgcagaaaacttctctgggaatg |
3934155 |
T |
|
| Q |
116 |
attttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgt------atttaccatg |
209 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||| || |||||||| ||| |||||||||||||| ||| ||||||| || | | | | |
|
|
| T |
3934154 |
attttagagggtaacatacccaatgaagatatctaagaccagttggaaaagattcaagcccttgaggaaaaagatccaaatagtcatcaaaatcaaccca |
3934055 |
T |
|
| Q |
210 |
aaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagca |
309 |
Q |
| |
|
||||| |||| || | ||||||||||||||| ||||||||||||||||||||| | || |||| | | | |||||||||||||||||||| |||||| |
|
|
| T |
3934054 |
aaaattcaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagcttcctattttctaagaagtctacacgtatgcttctgatagca |
3933955 |
T |
|
| Q |
310 |
tcagtaccctaccattaatgtaaaagaaaa |
339 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |
|
|
| T |
3933954 |
tcagaaccctgccattaatgtaaaagaaaa |
3933925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 3921033 - 3920704
Alignment:
| Q |
16 |
acatattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatg |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| | ||| | | ||||| |||||||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
3921033 |
acatattcaattacctgtactccacaccatagcttttccattcgaccaagatacaagtccaatataacaagattctcagcaaaaaacttctctgagaatg |
3920934 |
T |
|
| Q |
116 |
attttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgt------atttaccatg |
209 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | || |||||||| ||| |||||||||||||| ||| ||||||| || | | ||| |
|
|
| T |
3920933 |
attttagagggtaatctatccaatgaagatatcttaaaccagttggaaaagattcaagcccttgaggaaaaagatccaaatagtcatcaaaataacccca |
3920834 |
T |
|
| Q |
210 |
aaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagca |
309 |
Q |
| |
|
|||||||||| || | ||||||||||||||| ||||||||||||||||||||| | || |||| | | | |||| ||||||||||||||| |||||| |
|
|
| T |
3920833 |
aaaatccaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagcttcctattttctaagaagtttacacgtatgcttctgatagca |
3920734 |
T |
|
| Q |
310 |
tcagtaccctaccattaatgtaaaagaaaa |
339 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |
|
|
| T |
3920733 |
tcagaaccctgccattaatgtaaaagaaaa |
3920704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 3956764 - 3956373
Alignment:
| Q |
19 |
tattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgatt |
118 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||| | | ||| || || ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
3956764 |
tattcaattatctgcactccacaccaaagtttttccagtaggctacctgacaggtccaatataacaagattctctgcagaaaacttctctgagagtgatt |
3956665 |
T |
|
| Q |
119 |
ttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaa |
218 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| |||||||| |||||| ||||| ||||| | | |||||| | | | | || |||||||||| |
|
|
| T |
3956664 |
ttagagggtaacatatccaatgaagatattttagatcagttggaaaagattgaatcccttcaggaatacgatccaaaccatctatgtcacgaaaatccaa |
3956565 |
T |
|
| Q |
219 |
atatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccc |
318 |
Q |
| |
|
| | ||||||||||||||||| ||||||||| |||||||||| || | |||| || ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
3956564 |
aaactgcaggttggtcatcttatcaaatacattggggcttaacttcagtttcctacttgctgacaagtctagacttatgcttctaatagcatcagtaccc |
3956465 |
T |
|
| Q |
319 |
taccattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtca |
418 |
Q |
| |
|
| |||||||||||||||||| |||| |||||||| |||| || ||| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3956464 |
tgtcattaatgtaaaagaaaa---tcaa-----------aatatttttcaccagaaagacaaatgttatctaaaattgccaaatattttttaccttgtca |
3956379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 4024021 - 4024191
Alignment:
| Q |
18 |
atattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgat |
117 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4024021 |
atattcacttacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaacttctctgggaatgat |
4024120 |
T |
|
| Q |
118 |
tttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaag |
188 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
4024121 |
tttagagggtaattcatccaagaaagatatcttagatcagttggaaaagattgaagcccttgaggaagaag |
4024191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 3808859 - 3809099
Alignment:
| Q |
23 |
caattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttag |
122 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3808859 |
caattacctgcactccacgccaaagcttttccattttactatcatacaagttcaatataacaagattctctgcagaaaagttctctgggaatgattttag |
3808958 |
T |
|
| Q |
123 |
agggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaaatat |
222 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| | |||||||| |||||| || |||||||||| | ||| | | || || ||||| |||| || |
|
|
| T |
3808959 |
aggacaatacatccaatgaagatatcttagattagttggaaaagattgaaacctttgaggaagacaattgaaactatctatatcaccaaaatacaaaaat |
3809058 |
T |
|
| Q |
223 |
cgcaggttggtcatcttagcaaatacatgagggcttaactc |
263 |
Q |
| |
|
|| || |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3809059 |
cgaagtttggtcatcttatcaaatacacgagggcttaactc |
3809099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 3816430 - 3816596
Alignment:
| Q |
18 |
atattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgat |
117 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3816430 |
atatccaattacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaacttctctgggaatgat |
3816529 |
T |
|
| Q |
118 |
tttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaa |
184 |
Q |
| |
|
||||||||| | | |||||||||||||| ||| | || ||||||| |||||||||||||||||| |
|
|
| T |
3816530 |
tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaa |
3816596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 199 - 375
Target Start/End: Original strand, 4024247 - 4024423
Alignment:
| Q |
199 |
tatttaccatgaaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgc |
298 |
Q |
| |
|
|||| |||| ||||||||||| || ||||||||||||||||||||||| |||||| ||||||| || || || | |||||||||||||| ||||| |
|
|
| T |
4024247 |
tattcaccacgaaaatccaaaaattgcaggttggtcatcttagcaaatgcatgagagcttaacatcagctttcttcttcctgacaagtctacacttatgc |
4024346 |
T |
|
| Q |
299 |
ttctaatagcatcagtaccctaccattaatgtaaaagaaaaattt-caatcattgaaagccatatttttaaccaaaat |
375 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||| |||||||||| ||| | | |||||| |||||||| ||||||| |
|
|
| T |
4024347 |
ttctaataacatcagtaccct-gcatgaatgtaagagaaaaatttaaaattagttaaagccgtatttttagccaaaat |
4024423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 4009170 - 4009235
Alignment:
| Q |
359 |
atatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtcatttttc |
424 |
Q |
| |
|
||| |||| |||||||| ||| ||||||||| |||| ||||||||| |||||||||||| |||||| |
|
|
| T |
4009170 |
atactttttaccaaaatgacaaatgttatctaaaattgccaaatatattttaccttgtcgtttttc |
4009235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 3964796 - 3964684
Alignment:
| Q |
26 |
ttacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttagagg |
125 |
Q |
| |
|
||||||| |||||| ||| || ||||| ||| ||||||| ||||| ||||||||| || ||||| || ||||| | ||||| |||||||| | ||| |
|
|
| T |
3964796 |
ttacctgcactccatgccagagtttttcaactcgactatatgacaagtccaatataacgagtttctccgctgaaaattcatctggcaatgatttcaaagg |
3964697 |
T |
|
| Q |
126 |
gtaatgcatccaa |
138 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3964696 |
gtaatgcatccaa |
3964684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 13396796 - 13397186
Alignment:
| Q |
19 |
tattcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgatt |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || | ||||| ||||| || |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
13396796 |
tattcaattacctgtactccacaccaaagcttttctacaaggctatatggcaagcccagtataacaagattatcaacagaaaacttctctgggaatgatt |
13396895 |
T |
|
| Q |
119 |
ttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaa |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||| | || ||||||||| ||| |
|
|
| T |
13396896 |
ttagagggtaatgcatccaataaagatatcttagatcagttggaaaaaattgaagcccttgaggaagacgatccaaaccgtctatatcatgaaaatacaa |
13396995 |
T |
|
| Q |
219 |
atatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccc |
318 |
Q |
| |
|
| || |||||||||||||||| |||||||| | |||||||||| || || ||||| || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13396996 |
aaatttcaggttggtcatcttatcaaatacaggcgggcttaacttcagcttcctaattgctgacaagtctacacttatgcttctaatagcatcagtaccc |
13397095 |
T |
|
| Q |
319 |
taccattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtca |
418 |
Q |
| |
|
| ||||| | |||||||||| |||| |||||||| |||||||| ||| ||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
13397096 |
tgtcattattataaaagaaaa---tcaa-----------aatattttttaccaaaatgacaaatgttatctaaaattgccaaat-ttttttaccttgtca |
13397180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 7031887 - 7031762
Alignment:
| Q |
61 |
ctataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttg |
160 |
Q |
| |
|
|||||| ||||| ||||| ||||||| || |||||||||||||| ||| || |||| | |||||||| | |||| |||||||||| || || || | |
|
|
| T |
7031887 |
ctataaggcaagctcaatctaacaaggttttctgcagaaaacttggatggtaaggattccaaagggtaatactcccaacgaagatatctcagttcgttag |
7031788 |
T |
|
| Q |
161 |
gaaaaaattgaagcccttgaggaaga |
186 |
Q |
| |
|
| ||||||| ||||||| |||||||| |
|
|
| T |
7031787 |
gcaaaaattcaagccctcgaggaaga |
7031762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 7037596 - 7037471
Alignment:
| Q |
61 |
ctataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttg |
160 |
Q |
| |
|
|||||| ||||| ||||| ||||||| || |||||||||||||| ||| || |||| | |||||||| | |||| |||||||||| || || || | |
|
|
| T |
7037596 |
ctataaggcaagctcaatctaacaaggttttctgcagaaaacttggatggtaaggattccaaagggtaatactcccaacgaagatatctcagttcgttag |
7037497 |
T |
|
| Q |
161 |
gaaaaaattgaagcccttgaggaaga |
186 |
Q |
| |
|
| ||||||| ||||||| |||||||| |
|
|
| T |
7037496 |
gcaaaaattcaagccctcgaggaaga |
7037471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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