View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_31 (Length: 422)
Name: NF15932_low_31
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 10131342 - 10130953
Alignment:
| Q |
14 |
gatttgttcaaatacatttacactatagccgctatttgacagtactgacagcaattatccctacctctgttacatatataatgactctatccccaaccag |
113 |
Q |
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| T |
10131342 |
gatttgttcgaattcatctacactatagccgctatttgacagtactgacagcaattatccctacttctgttacatctatgatgactctatccccaaccag |
10131243 |
T |
|
| Q |
114 |
accttgcagccacctcatcgcccccaaacagaaacgggtattgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaac |
213 |
Q |
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||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10131242 |
accatgcagccacctcatcgccac-aaacagaaacgggtattgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaac |
10131144 |
T |
|
| Q |
214 |
acatattgtttcaaaaatgtataaaatataacagtaataatcattcacaactaaaactcacatactattatgtcaacaaagccttgatcgttatgtcagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10131143 |
acatattgtttcaaaaatgtataaaatataacagtaataatcattcacaactaaaactcacatactattatgtcaacaaagccttgatcgttatgtcact |
10131044 |
T |
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| Q |
314 |
taacaacggctgaaaacactagtatttgcaagttataacaatgtgtgtgcagtcgagtaaaattttaaacataccattaagcaaccatgtagg |
406 |
Q |
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| T |
10131043 |
taacaacggcacaaaacaatagtatttgcaagttataacaa--tgcatgcagtcgagtaaaatttcaaacataccattaagcaaccatatagg |
10130953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 153 - 356
Target Start/End: Original strand, 10990065 - 10990258
Alignment:
| Q |
153 |
attgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaacacatattgtttcaaaaatgtataaaatataacagtaata |
252 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| ||||| |||||| || |||||||||| || |||| ||| |
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| T |
10990065 |
attgttacaaaactaatctaaccatcataatcgacatgcacaatttttgaaaaatagaaatccatattattacaaaaatgtacaa-------cagtgata |
10990157 |
T |
|
| Q |
253 |
atcattcacaactaaaactcacatactattatgtcaacaaagccttgatcgttatgtcagttaacaacggctgaaaacactagtatttgcaagttataac |
352 |
Q |
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|||||||| |||||||||||||||| |||||| |||||| | |||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
10990158 |
atcattcataactaaaactcacata---ttatgtaaacaaaacattgatcattatgtcagttaacaacgacaagaaacactagtatttgcaagttataac |
10990254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 153 - 406
Target Start/End: Complemental strand, 21420507 - 21420267
Alignment:
| Q |
153 |
attgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaacacatattgtttcaaaaatgtataaaatataacagtaata |
252 |
Q |
| |
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||||||||||||||||| |||||||| |||||| |||||||||||| | |||| ||||| |||||| ||||||||||||| || |||| ||| |
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| T |
21420507 |
attgttacaaaactaatttaaccatcacaatccatatgaacaattttcgaaaaatagaaatccatattatttcaaaaatgtacaa-------cagtgata |
21420415 |
T |
|
| Q |
253 |
atcattcacaactaaaactcacatactattatgtcaacaaagccttgatcgttatgtcagttaacaacggctgaaaacactagtatttgcaagttataac |
352 |
Q |
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|||||||| ||| |||||||| ||| |||||||| ||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
21420414 |
atcattcaaaacaaaaactcagatattattatgtaaacaaggccttgatcattatgtcagttaacaacgacaagaaacactagtatttgcaagttataac |
21420315 |
T |
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| Q |
353 |
aatgtgtgtgcagtcgagtaaaattttaaacataccattaagcaaccatgtagg |
406 |
Q |
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|| | |||| |||||||||| ||| |||| ||||||||||||| ||||| |
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| T |
21420314 |
aa------tccagttgagtaaaattctaagcatagcattaagcaaccaagtagg |
21420267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 16692257 - 16692374
Alignment:
| Q |
153 |
attgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaacacatattgtttcaaaaatgtataaaatataacagtaata |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||| | |||||| ||| |||||| ||||||||||| || |||||| ||| |
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| T |
16692257 |
attgttacaaaactaatctaaccatcataatccacatgcacaattttcgaaaaacaaaaatccatattatttcaaaaatg-------tacaacagtgata |
16692349 |
T |
|
| Q |
253 |
atcattcacaactaaaactcacata |
277 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
16692350 |
atcattcataactaaaactcacata |
16692374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 153 - 356
Target Start/End: Complemental strand, 18062539 - 18062346
Alignment:
| Q |
153 |
attgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaacacatattgtttcaaaaatgtataaaatataacagtaata |
252 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||||| |||||| || |||||||||| || |||| ||| |
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| T |
18062539 |
attgttacaaaactaatctaaccatcataatcgacatgcacaatttttgaaaaacagaaatccatattattacaaaaatgtacaa-------cagtgata |
18062447 |
T |
|
| Q |
253 |
atcattcacaactaaaactcacatactattatgtcaacaaagccttgatcgttatgtcagttaacaacggctgaaaacactagtatttgcaagttataac |
352 |
Q |
| |
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|||||||| |||||||||||||||| |||||| |||||| | |||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
18062446 |
atcattcataactaaaactcacata---ttatgtaaacaaaacattgatcattatgtcagttaacaacgacaagaaacactagtatttgcaagttataac |
18062350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 153 - 356
Target Start/End: Original strand, 10246039 - 10246232
Alignment:
| Q |
153 |
attgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaacacatattgtttcaaaaatgtataaaatataacagtaata |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| ||||| |||||| || |||||||||| || |||| ||| |
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| T |
10246039 |
attgttacaaaactaatctaaccatcataatcgacatgcacaatttttgaaaaatagaaatccatattattacaaaaatgtacaa-------cagtgata |
10246131 |
T |
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| Q |
253 |
atcattcacaactaaaactcacatactattatgtcaacaaagccttgatcgttatgtcagttaacaacggctgaaaacactagtatttgcaagttataac |
352 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||||| | |||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
10246132 |
atcattcataactaaaactcacata---ttatgtaaacaaaacattgatcattatgtcagttaacaacgacaagaaacactagtatttgcaagttataac |
10246228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 153 - 356
Target Start/End: Original strand, 17921420 - 17921613
Alignment:
| Q |
153 |
attgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaacacatattgtttcaaaaatgtataaaatataacagtaata |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| ||||| |||||| || |||||||||| || |||| ||| |
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| T |
17921420 |
attgttacaaaactaatctaaccatcataatcgacatgcacaatttttgaaaaatagaaatccatattattacaaaaatgtacaa-------cagtgata |
17921512 |
T |
|
| Q |
253 |
atcattcacaactaaaactcacatactattatgtcaacaaagccttgatcgttatgtcagttaacaacggctgaaaacactagtatttgcaagttataac |
352 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||||| | |||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
17921513 |
atcattcataactaaaactcacata---ttatgtaaacaaaacattgatcattatgtcagttaacaacgacaagaaacactagtatttgcaagttataac |
17921609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 27664112 - 27664187
Alignment:
| Q |
153 |
attgttacaaaactaatccaaccatcataatccacatgaacaatttttgtaaaacagaaacacatattgtttcaaa |
228 |
Q |
| |
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|||||||||||||||||| |||||||| |||||| |||||||||||| | |||||||||| |||||| ||||||| |
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| T |
27664112 |
attgttacaaaactaatctaaccatcacaatccatatgaacaattttcgaaaaacagaaatccatattatttcaaa |
27664187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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