View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_low_33 (Length: 415)
Name: NF15932_low_33
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 44706969 - 44707350
Alignment:
| Q |
18 |
attttcaaatggcgtgatggtgacaggagaattagctatgttggaaccctgtactataaagagaagcatgagtatacgatttttatcnnnnnnnnatatg |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
44706969 |
attttcaaatggcgtgatggtgacgggagaattagctatgttggaaccctgtactataaagagaagcatgagtatatgatttt-atcttttttttatatg |
44707067 |
T |
|
| Q |
118 |
ctacatttatcgatggtgtttgaaaatgtcttgtgagattctaaatacaaaaccataccgttaagagcaccgctgtgtctgctccctgtgaattcttaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44707068 |
ctacatttatcgatggtgtttgaaaatgtcttgtgagattctaaatacaaaaccataccgtcaagagcaccgctgtgtctgctccctgtgaattcttaaa |
44707167 |
T |
|
| Q |
218 |
ggtaacatatgcagtcttagtgctctcagtttccctgcaaaaaattccatgtaagtgaattggggtgagtggtgaaaatttgacaaatactttaaacaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44707168 |
ggtaacatatgcagtcttagtgctctcagtttccctgcaaaaaattccatgtaagtgaattggggtgagtggtgaaaatttgacaaatactttaaacaat |
44707267 |
T |
|
| Q |
318 |
gacaatcattaaaatggatgagtctaacttttgcatctcaacatattgaatgtcaccagagaatgagaaaaactctttcatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44707268 |
gacaatcattaaaatggatgagtctaacttttgcatctcaacatattgaatgtcaccagagaatgagaaaaactctttgatat |
44707350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 11764395 - 11764450
Alignment:
| Q |
171 |
cataccgttaagagcaccgctgtgtctgctccctgtgaattcttaaaggtaacata |
226 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
11764395 |
cataccgtcaagagaactgctgtctctgctccctgtgaatccttaaaggtaacata |
11764450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University