View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_35 (Length: 407)
Name: NF15932_low_35
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 7334173 - 7333791
Alignment:
| Q |
7 |
tagataattctctgcagtgtcttcaggtgtctttccgttgttctgttgtaccaatccttctccaacccatagattgactaatctccttgctgggatttca |
106 |
Q |
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| T |
7334173 |
tagataactctctgcagtgtcttcaggtgtctttccgttgttttgttgtaccaatccttctccaacccatagattgactaatctccttgctgggatttca |
7334074 |
T |
|
| Q |
107 |
tagtctaatgggaagtttgtaaagcaatagagacagtccctcatagtattactcgactcttccctgttctcttttggttgcagccaatattttttgaaat |
206 |
Q |
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| T |
7334073 |
tagtctaatgggaagtttgtaaagcaatagagacagtccctcatagtattactcaactcttccctgttatcttttggttgcagccaatattttttgaaat |
7333974 |
T |
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| Q |
207 |
ggccatgattgatttggtcaagcacccatgataaactcgttggagtcgtaccattcgctgatatgacacacccaagagataagatggccaatggtaagcc |
306 |
Q |
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| T |
7333973 |
ggccatgattgatttggtcaagcacccatgataaactcgttggagttgtaccattcgctgatatgacacacccaagagataagatggccaatggtaagcc |
7333874 |
T |
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| Q |
307 |
cccacattttcccactaccttttttgctaaactttcctctgttggttctaaccttctgctggccaccttctgaaataacatcc |
389 |
Q |
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| T |
7333873 |
cccacattttcccactaacttttttgctaaactttcctcttttggttctaaccttctgctggccaccttctgaaataacatcc |
7333791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 6821821 - 6821728
Alignment:
| Q |
56 |
accaatccttctccaacccatagattgactaatctccttgctgggatttcatagtctaatgggaagtttgtaaagcaatagagacagtccctca |
149 |
Q |
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| T |
6821821 |
accaatccttctccaacccatagattgactaatctccttgccgagatttcatagtctaatggaaattttgtaaagtaatagagacagttcctca |
6821728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 6821611 - 6821532
Alignment:
| Q |
263 |
gctgatatgacacacccaagagataagatggccaatggtaagcccccacattttcccactaccttttttgctaaactttc |
342 |
Q |
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||||| |||||| |||||||||||| ||| || ||| || ||||||||||||||||||||||| ||||| ||| |||| |
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| T |
6821611 |
gctgacatgacaaacccaagagatatgattgctaatatcaatcccccacattttcccactaccttctttgcaaaattttc |
6821532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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