View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_38 (Length: 402)
Name: NF15932_low_38
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 71 - 388
Target Start/End: Original strand, 22782370 - 22782687
Alignment:
| Q |
71 |
cagaaaatatgcattattaaaaggagaaaaccacataatctccatcactttcctcattttctcaaactgggcattttctttgattttttatttctctatt |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
22782370 |
cagaaaatatgcattattaaaaggagaaaaccacataatctccatccctttcctcattttctcaaactgtccattttcttttattttttatttctctatt |
22782469 |
T |
|
| Q |
171 |
acttgttcctttatccttgcaacatcagtgtgtgtttttccctccatttttctcttcaaggaatgcctcaaataatctccaaacttgactttctggtaca |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22782470 |
acttgttcctttatccttgcaacatcagtgtgtgtttttccctccatttttctcttcaaggaatgcctcaaataatctccaaacttgactttctggtaca |
22782569 |
T |
|
| Q |
271 |
tcttgggatgttgagcatctatcatatgatgaaatggctcaacttcaacatcatcttgaggcaacaaaaatgatgcatgagaagtccttctcttgttctt |
370 |
Q |
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| T |
22782570 |
tcttgggatgttgagcatctatcatatgatgaaatggctcaacttcaacatcatcttgaggcaacaaaaatgatgcattagaagtccttctcttgttctt |
22782669 |
T |
|
| Q |
371 |
atttgtcactgctctgtg |
388 |
Q |
| |
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|||||||||||||||||| |
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| T |
22782670 |
atttgtcactgctctgtg |
22782687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 142 - 378
Target Start/End: Original strand, 22778317 - 22778553
Alignment:
| Q |
142 |
cattttctttgattttttatttctctattacttgttcctttatccttgcaacatcagtgtgtgtttttccctccatttttctcttcaaggaatgcctcaa |
241 |
Q |
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| T |
22778317 |
cattttctttgagttgttatgtcactattacatgttcctttatctttgccacatcggtgtgtgtttttcgctccatttttctctttaaggaatgcctcaa |
22778416 |
T |
|
| Q |
242 |
ataatctccaaacttgactttctggtacatcttgggatgttgagcatctatcatatgatgaaatggctcaacttcaacatcatcttgaggcaacaaaaat |
341 |
Q |
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|||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||| |||||| |||| || |||||| |
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| T |
22778417 |
ataatctccatacttgactttctggtacatcttggggttttgagcatctatcatatgatcaaagggctcaacttcaacgtcatctcgagggaataaaaat |
22778516 |
T |
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| Q |
342 |
gatgcatgagaagtccttctcttgttcttatttgtca |
378 |
Q |
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||||||| |||| ||||||| ||||||| |||||||| |
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| T |
22778517 |
gatgcataagaaatccttcttttgttctgatttgtca |
22778553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 165 - 388
Target Start/End: Original strand, 22774961 - 22775184
Alignment:
| Q |
165 |
tctattacttgttcctttatccttgcaacatcagtgtgtgtttttccctccatttttctcttcaaggaatgcctcaaataatctccaaacttgactttct |
264 |
Q |
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|||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| || ||||||| |
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| T |
22774961 |
tctattacttatgcctttatctttgccacatcagtgtgtgtttttccctccatttttctcttcatggattgcctcaaataatctccatacaacactttct |
22775060 |
T |
|
| Q |
265 |
ggtacatcttgggatgttgagcatctatcatatgatgaaatggctcaacttcaacatcatcttgaggcaacaaaaatgatgcatgagaagtccttctctt |
364 |
Q |
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| T |
22775061 |
ggtacatcttagggttttgagcatctatcatatgatcaaagggctccacttcaacatcatctcgaggaaacacaaatgttgcatgagaagtccttctctt |
22775160 |
T |
|
| Q |
365 |
gttcttatttgtcactgctctgtg |
388 |
Q |
| |
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||| |||||||||| ||||||||| |
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| T |
22775161 |
gtttttatttgtcattgctctgtg |
22775184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 164 - 388
Target Start/End: Original strand, 22765140 - 22765364
Alignment:
| Q |
164 |
ctctattacttgttcctttatccttgcaacatcagtgtgtgtttttccctccatttttctcttcaaggaatgcctcaaataatctccaaacttgactttc |
263 |
Q |
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|||||||| |||||||||||| | || |||||| | |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |
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| T |
22765140 |
ctctattaactgttcctttatcttggccacatcaatatgtgtttttccctccatttttctcttcatggattgccttaaataatctccaaacttgactttc |
22765239 |
T |
|
| Q |
264 |
tggtacatcttgggatgttgagcatctatcatatgatgaaatggctcaacttcaacatcatcttgaggcaacaaaaatgatgcatgagaagtccttctct |
363 |
Q |
| |
|
||||| || |||| | || ||||||||||||||||| ||||||||||| ||||||||||||| |||| | ||||||||||||||| ||||||||||| | |
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| T |
22765240 |
tggtaaattttggtgttttcagcatctatcatatgatcaaatggctcaatttcaacatcatctcgagggatcaaaaatgatgcatgggaagtccttcttt |
22765339 |
T |
|
| Q |
364 |
tgttcttatttgtcactgctctgtg |
388 |
Q |
| |
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||||||||||||| ||||||||||| |
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| T |
22765340 |
tgttcttatttgttactgctctgtg |
22765364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 118 - 376
Target Start/End: Complemental strand, 16085328 - 16085070
Alignment:
| Q |
118 |
ctttcctcattttctcaaactgggcattttctttgattttttatttctctattacttgttcctttatccttgcaacatcagtgtgtgtttttccctccat |
217 |
Q |
| |
|
|||||||| | |||||||||||| | ||||||| |||| ||||| |||||||| | ||||||| ||||||| | |||||||| ||||||||||||| |
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| T |
16085328 |
ctttcctcgtattctcaaactggtc-ttttcttaaatttgttattcttctattacatattcctttctccttgccatatcagtgtttgtttttccctccta |
16085230 |
T |
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| Q |
218 |
ttttctcttcaa-ggaatgcctcaaataatctccaaacttgactttctggtacatcttgggatgttgagcatctatcatatgatgaaatggctcaacttc |
316 |
Q |
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| |||| ||||| ||| | |||||||||||||||| || |||||||||||||||| ||||| | || ||||| ||||||||| | ||| ||||||||||| |
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| T |
16085229 |
tattcttttcaaaggattccctcaaataatctccatacctgactttctggtacattttggggttttcagcatttatcatatggtcaaagggctcaacttc |
16085130 |
T |
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| Q |
317 |
aacatcatcttgaggcaacaaaaatgatgcatgagaagtccttctcttgttcttatttgt |
376 |
Q |
| |
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|||||| ||| |||| |||| ||||| ||||| ||| ||||| |||||||||||||||| |
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| T |
16085129 |
aacatcttctcgagggaacacaaatgttgcataagacatccttttcttgttcttatttgt |
16085070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 392
Target Start/End: Complemental strand, 23278573 - 23278382
Alignment:
| Q |
201 |
tgtgtttttccctccatttttctcttcaaggaatgcctcaaataatctccaaacttgactttctggtacatcttgggatgttgagcatctatcatatgat |
300 |
Q |
| |
|
||||||||||| |||| ||| || ||||||| ||||||||||| |||||| | ||| || || |||||||||||||| |||| ||||||||||||||| |
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| T |
23278573 |
tgtgtttttccttccaatttcctattcaaggtgtgcctcaaatactctccataagtgatttccttgtacatcttgggattttgatcatctatcatatgat |
23278474 |
T |
|
| Q |
301 |
gaaatggctcaacttcaacatcatcttgaggcaacaaaaatgatgcatgagaagtccttctcttgttcttatttgtcactgctctgtgctcc |
392 |
Q |
| |
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||| ||| ||| |||| ||||||| | || |||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
23278473 |
caaagggcccaagttcagcatcatcccgggggaacaaaaatgatacaaaagaagtccttctcttgttcttatttgtcatagctctatgctcc |
23278382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 22782294 - 22782340
Alignment:
| Q |
17 |
gaatacaagtatagattttatggggaaaatcaagacataccaaatat |
63 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
22782294 |
gaatacaagtatagattttaggggggaaatcaagacataccaaatat |
22782340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 385
Target Start/End: Original strand, 22770263 - 22770382
Alignment:
| Q |
266 |
gtacatcttgggatgttgagcatctatcatatgatgaaatggctcaacttcaacatcatcttgaggcaacaaaaatgatgcatgagaagtccttctcttg |
365 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||| |||| | | | |||| ||||| | ||||| |||||| ||||| | || ||||||| ||||| |
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| T |
22770263 |
gtacatcttgggattttgatcatctatcatatgatctaatgccccgatttcagcatcaccctgagggaacaaatatgatataaaagtagtccttttcttg |
22770362 |
T |
|
| Q |
366 |
ttcttatttgtcactgctct |
385 |
Q |
| |
|
||||||||||| | |||||| |
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|
| T |
22770363 |
ttcttatttgtgattgctct |
22770382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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