View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_low_40 (Length: 396)

Name: NF15932_low_40
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_low_40
NF15932_low_40
[»] chr6 (10 HSPs)
chr6 (16-318)||(34923505-34923807)
chr6 (130-202)||(34129860-34129932)
chr6 (130-202)||(34135549-34135621)
chr6 (130-202)||(34138452-34138524)
chr6 (60-131)||(34129766-34129837)
chr6 (60-131)||(34138358-34138429)
chr6 (60-131)||(34135455-34135526)
chr6 (327-389)||(34923911-34923973)
chr6 (84-132)||(24339115-24339163)
chr6 (16-64)||(34932163-34932211)
[»] chr4 (3 HSPs)
chr4 (203-322)||(18178378-18178497)
chr4 (327-389)||(18178592-18178654)
chr4 (259-293)||(32433224-32433258)
[»] chr3 (4 HSPs)
chr3 (203-322)||(13215597-13215716)
chr3 (203-322)||(46699520-46699639)
chr3 (327-389)||(13215440-13215502)
chr3 (327-389)||(46699723-46699785)
[»] chr8 (1 HSPs)
chr8 (224-277)||(38383326-38383379)
[»] chr5 (2 HSPs)
chr5 (90-131)||(31269604-31269645)
chr5 (84-132)||(30104390-30104438)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 34923505 - 34923807
Alignment:
Q  16 gtttaatctactaaatcaatgtcaaacaaattatgctacctccaccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34923505 gtttaatctactaaatcaatgtcaaacaaattatgctacctccaccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttc 34923604  T
Q  116 agaaggcattaaggcaaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgtgcattattaagga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34923605 agaaggcattaaggcaaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgtgcattattaagga 34923704  T
Q  216 acataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaatgaatgatccgta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34923705 acataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaatgaatgatccgta 34923804  T
Q  316 ttc 318  Q
    |||    
T  34923805 ttc 34923807  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 34129860 - 34129932
Alignment:
Q  130 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34129860 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 34129932  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 34135549 - 34135621
Alignment:
Q  130 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34135549 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 34135621  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 34138452 - 34138524
Alignment:
Q  130 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34138452 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 34138524  T

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Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 34129766 - 34129837
Alignment:
Q  60 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34129766 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 34129837  T

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Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 34138358 - 34138429
Alignment:
Q  60 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34138358 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 34138429  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 34135455 - 34135526
Alignment:
Q  60 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34135455 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcaaaaggcattaaggca 34135526  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 34923911 - 34923973
Alignment:
Q  327 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataatt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  34923911 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataatt 34923973  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 24339115 - 24339163
Alignment:
Q  84 agatagatgctaagggtacatattgaactttcagaaggcattaaggcaa 132  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  24339115 agatagatgttaagggtgcatattaaactttcagaaggcattaaggcaa 24339163  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 34932163 - 34932211
Alignment:
Q  16 gtttaatctactaaatcaatgtcaaacaaattatgctacctccaccatc 64  Q
    ||||||||||||  ||||||||||||| | |||||||||||||||||||    
T  34932163 gtttaatctacttgatcaatgtcaaaccagttatgctacctccaccatc 34932211  T

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Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 18178378 - 18178497
Alignment:
Q  203 gcattattaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 302  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18178378 gcattactaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 18178477  T
Q  303 tgaatgatccgtattctctt 322  Q
    ||||||||||||||||||||    
T  18178478 tgaatgatccgtattctctt 18178497  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 18178592 - 18178654
Alignment:
Q  327 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataatt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  18178592 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataatt 18178654  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 32433224 - 32433258
Alignment:
Q  259 tataagaaaatcttttgattgtttgttgctttata 293  Q
    ||||||||||||||||||| |||||||||||||||    
T  32433224 tataagaaaatcttttgatggtttgttgctttata 32433258  T

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Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 13215716 - 13215597
Alignment:
Q  203 gcattattaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 302  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13215716 gcattactaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 13215617  T
Q  303 tgaatgatccgtattctctt 322  Q
    ||||||||||||||||||||    
T  13215616 tgaatgatccgtattctctt 13215597  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 46699520 - 46699639
Alignment:
Q  203 gcattattaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 302  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699520 gcattactaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 46699619  T
Q  303 tgaatgatccgtattctctt 322  Q
    ||||||||||||||||||||    
T  46699620 tgaatgatccgtattctctt 46699639  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 13215502 - 13215440
Alignment:
Q  327 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataatt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  13215502 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataatt 13215440  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 46699723 - 46699785
Alignment:
Q  327 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataatt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  46699723 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataatt 46699785  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 38383379 - 38383326
Alignment:
Q  224 aaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgat 277  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  38383379 aaatatcagatgaaatagagctattttagaagggatataatgaaatcttttgat 38383326  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 31269645 - 31269604
Alignment:
Q  90 atgctaagggtacatattgaactttcagaaggcattaaggca 131  Q
    ||||||||| ||||||||||||||||||||  ||||||||||    
T  31269645 atgctaaggatacatattgaactttcagaacacattaaggca 31269604  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 30104390 - 30104438
Alignment:
Q  84 agatagatgctaagggtacatattgaactttcagaaggcattaaggcaa 132  Q
    |||||||||||||||||||||  | |||||||| |||||||||| ||||    
T  30104390 agatagatgctaagggtacattataaactttcaaaaggcattaatgcaa 30104438  T

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