View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_42 (Length: 388)
Name: NF15932_low_42
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 45625696 - 45626048
Alignment:
| Q |
20 |
agctgagaccaataaatgcagttgacaagtttctcaaggcctctgagaggttggtagttgcagcattcttaatgatctgtgtatcttcagatagcctact |
119 |
Q |
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| T |
45625696 |
agctgagaccaataaatgcagttgacaagtttctcaaggcctctgagaggttggtagttgcagcattcttaatgatctgtgtatcttcagatagcctact |
45625795 |
T |
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| Q |
120 |
taaaagttccccagtccgagtaacatcaaagaaagctatttcctaaaaaaccatcatccgtgaattaacaaacaagcatttaacgtgggaaagagggtca |
219 |
Q |
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| T |
45625796 |
taaaagttccccagtccgagtaacatcaaagaaagctatttcctgaaaaaccatcatccgtgaattaacaaacaagcatttaacgtgggaaagagggtca |
45625895 |
T |
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| Q |
220 |
ttactaattaaaagctacagaatttaaaattttctactctccaagttatcaaaagtaacataattgaagaaaaacagacaaattacctggtttacaaggt |
319 |
Q |
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| T |
45625896 |
ttactaattaaaagctacagaatttaaaattttctactctccaagttatcaaaagtaacataattgaagaaaaacagacaaattacctggtttacaaggt |
45625995 |
T |
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| Q |
320 |
gactgaacaaattcttccttagccgtgcaacaaccctttcactggcagaataa |
372 |
Q |
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| T |
45625996 |
gactgaacaaattcttccttagccgtgcaacaaccctttcactggcagaataa |
45626048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 12049453 - 12049383
Alignment:
| Q |
302 |
ttacctggtttacaaggtgactgaacaaattcttccttagccgtgcaacaaccctttcactggcagaataa |
372 |
Q |
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| T |
12049453 |
ttacctggtttacaaggtgactgaacatattcttccttagcagcgctacaacccttgcgcttgcagaataa |
12049383 |
T |
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