View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_45 (Length: 380)
Name: NF15932_low_45
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_45 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 37940034 - 37940324
Alignment:
| Q |
11 |
gaagaaaataataacaacaatgtgtctgcaattgcatcagatcctaagtttaggcttgctgttgcagctgcaatttcatcactcatgaataaagaaagca |
110 |
Q |
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| T |
37940034 |
gaagaaaataataacaacaatgtgtctgcaattgcatcagatcctaagtttaggcttgctgttgcagctgcaatttcatcactcatgaataaagaaagca |
37940133 |
T |
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| Q |
111 |
acaacactactactcatggtagcaacaattgagtcattgatcatcaatctctttttgggaatgctaagcccaatatatgannnnnnnnnncactacaaag |
210 |
Q |
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| T |
37940134 |
acaacaccactactcatggtagcaacaattgagtcattgatcatcaatctctttttgggaatggtaagcccactatatgattttttttttcgctacaaag |
37940233 |
T |
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| Q |
211 |
aagttaataatagtaataataagtttgttttgaagacaaacaaagaagaaagtgaatgttattatgtagcaatatattacaatagtggtta |
301 |
Q |
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| T |
37940234 |
aagttaataatagtaataataagtttgttttgaagacaaacaaagaagaaagtgaatgttattatgtagcaatatattacaatagtggtta |
37940324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 37940395 - 37940435
Alignment:
| Q |
300 |
tactagcaaattttgtttcacttgtaatctggcttttcttg |
340 |
Q |
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| T |
37940395 |
tactagcaaattctgtttcacttgtaatctggcttttcttg |
37940435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 23220276 - 23220231
Alignment:
| Q |
335 |
ttcttggttttttcttcaataaagtaacgtgtcaacttacactaac |
380 |
Q |
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| T |
23220276 |
ttcttggttttttcttcaataacgtaacgtgtcaacttacactaac |
23220231 |
T |
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