View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_49 (Length: 356)
Name: NF15932_low_49
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_49 |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 24774457 - 24774206
Alignment:
| Q |
19 |
gaacaagtggtttggatggagatcatggtttctttggaggttctaaaggaaaacttccttttgttgaacagccttctag----aacactttttgttagaa |
114 |
Q |
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| T |
24774457 |
gaacaagtggtttggatggagatcatggtttctttggaggttctaaaggaaaacttcattttgttgaacagccttctagctagaacactttttgttagaa |
24774358 |
T |
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| Q |
115 |
acattaatagcagtgtagaagactttgtttgagctaaagactctatttgaggtatgacttcattatttttcgact----ctaatgtattcttaaattttt |
210 |
Q |
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| T |
24774357 |
acattaatagcagtgtagaagactttgtttgagctaaagactctatttgaggtatgtcttcattatttttcgactctagctaatgtattcttaaattttt |
24774258 |
T |
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| Q |
211 |
agcaatcatttaaaaacattaattgtaaaacgtaaatgaattgctggttttt |
262 |
Q |
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| T |
24774257 |
agcaatcattaaaaaacattaattgtaaaacgtaaatggattgctgtttttt |
24774206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 24754899 - 24754839
Alignment:
| Q |
295 |
aaagagtttctctttagtttatttctttggtgtctgttttgatatgaagcccgatgataaaa |
356 |
Q |
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| T |
24754899 |
aaagagtttttctt-agtttatttgtttcgtgtctgttttgatatgaagcccgatgataaaa |
24754839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 24763896 - 24763836
Alignment:
| Q |
295 |
aaagagtttctctttagtttatttctttggtgtctgttttgatatgaagcccgatgataaaa |
356 |
Q |
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| T |
24763896 |
aaagagtttttctt-agtttatttgtttcgtgtctgttttgatatgaagcccgatgataaaa |
24763836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 45041476 - 45041414
Alignment:
| Q |
76 |
cttttgttgaacagccttctagaacactttttgttagaaacattaatagcagtgtagaagact |
138 |
Q |
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| T |
45041476 |
cttttggtgaacaatcttctagaacactttttgttggaaacattactagcaatgcagaagact |
45041414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 24994678 - 24994710
Alignment:
| Q |
324 |
gtgtctgttttgatatgaagcccgatgataaaa |
356 |
Q |
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| T |
24994678 |
gtgtctattttgatatgaagcccgatgataaaa |
24994710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 40161592 - 40161319
Alignment:
| Q |
19 |
gaacaagtggtttggatggagatcatggtttctttggaggttctaaaggaaaacttccttttgttgaacagccttctagaacactttttgttagaaacat |
118 |
Q |
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| T |
40161592 |
gaacaagtggtttggatggagatcatggtttctttggaggttctaaaggaaaacttccttttgttgaacagccttctagaacactttttgttagaaacat |
40161493 |
T |
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| Q |
119 |
taatagcagtgtagaagactttgtttgagctaaagactctatttgaggtatgacttcat--tatttttcgactctaatgtattcttaaatttttagcaat |
216 |
Q |
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| T |
40161492 |
taatagcagcgtagaagac----tttgaactaaagactctgtttgaggtatgtcttcattctttttttcgacgctaatgtattcttaaatttttagcaaa |
40161397 |
T |
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| Q |
217 |
catttaaaaacattaattgtaaaacgtaaatgaattgctggtttttcttcttc-----ctggcagcaatatggagata |
289 |
Q |
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| T |
40161396 |
catttcaaagcattaattgtaaaatgtaaatggattgctatgttttctttttctttttctggcagcaatatggagata |
40161319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 6800 - 6768
Alignment:
| Q |
324 |
gtgtctgttttgatatgaagcccgatgataaaa |
356 |
Q |
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| T |
6800 |
gtgtctattttgatatgaagcccgatgataaaa |
6768 |
T |
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