View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_low_5 (Length: 638)

Name: NF15932_low_5
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_low_5
NF15932_low_5
[»] chr1 (4 HSPs)
chr1 (168-595)||(52800054-52800484)
chr1 (98-168)||(52800548-52800618)
chr1 (4-47)||(52800651-52800694)
chr1 (591-623)||(52799985-52800017)
[»] scaffold0042 (2 HSPs)
scaffold0042 (172-507)||(31652-31984)
scaffold0042 (98-168)||(32070-32140)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 168 - 595
Target Start/End: Complemental strand, 52800484 - 52800054
Alignment:
Q  168 gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaac 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  52800484 gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcacgagttcgataagttacatgagcaagtgaagaaacctcgagaac 52800385  T
Q  268 aggttgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc 367  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52800384 aggttgctgacgctgaagcacttctagatctgacacgcactcttgttggatccgttaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc 52800285  T
Q  368 atctcttctcaaacactatgctcacccacccaacaa---cacttccattgactggcataaacttggcatttctgtttcccccattttcctcactgttcat 464  Q
    ||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52800284 atctcttctcaaacactatgctcacccacccaacaacgccgcttccattgactggcataaactcggcatttctgtttcccccattttcctcactgttcat 52800185  T
Q  465 ggttcttctaccatgcttggtcccatggaaaatcagttgaaacaacgcaaaaccattgtttctagaaagagaaatcctcgctctactacaactgctagac 564  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52800184 ggttcctctaccatgcttggtcccatggaaaatcagttgaaacaacgcaaaaccattgtttctagaaagagaaatcctcgctctactacaactgctagac 52800085  T
Q  565 ctcaacaggtctctttttcttcctcattatg 595  Q
    |||||||||||||  ||||||||| ||||||    
T  52800084 ctcaacaggtctccctttcttccttattatg 52800054  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 52800618 - 52800548
Alignment:
Q  98 ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 168  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52800618 ggagaatcaggactccagtattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 52800548  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 52800694 - 52800651
Alignment:
Q  4 tgtttcgtcgcgttaagagagaacgcctcaacgtcgccgccgcc 47  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  52800694 tgtttcgtcgcgttaagagagaacgcctcaacgccgccgccgcc 52800651  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 623
Target Start/End: Complemental strand, 52800017 - 52799985
Alignment:
Q  591 ttatggaacaaatatgaactttatagtatcaat 623  Q
    ||||||||||||||||||||||||||| |||||    
T  52800017 ttatggaacaaatatgaactttatagtgtcaat 52799985  T

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Target: scaffold0042 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 172 - 507
Target Start/End: Complemental strand, 31984 - 31652
Alignment:
Q  172 aaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaacaggt 271  Q
    ||||||||||||| ||||||  || ||| || ||||||||||||||||||||||| ||||| |||||| |||||||||||||||| || | ||| ||| |    
T  31984 aaaaagatgatttaatgaacactgcttcggacaagttcgattcaatccttcatgacttcgacaagttagacgagcaagtgaagaagccacaagagcagat 31885  T
Q  272 tgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttcatct 371  Q
    || ||||||||||||| |||||||||||||||||||||| |||| |||  |||| ||| | || |||||||| |||||||||||||||||||| ||||||    
T  31884 tgttgacgctgaagcacttctagatctgacacgcactctggttggatcggttaactctatggtgaacgaaggggttactccttctcagtttgtgtcatct 31785  T
Q  372 cttctcaaacactatgctcacccacccaacaacacttccattgactggcataaacttggcatttctgtttcccccattttcctcactgttcatggttctt 471  Q
    || |||||||| |||||||||||||||   |||||||||||||||||||| || ||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  31784 ctcctcaaacattatgctcacccaccc---aacacttccattgactggcaaaagcttggcattttcgtttcacccattttcctcactgttcatggctctt 31688  T
Q  472 ctaccatgcttggtcccatggaaaatcagttgaaac 507  Q
    | |||||||||| ||||||||||| |||||||||||    
T  31687 caaccatgcttgatcccatggaaagtcagttgaaac 31652  T

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Target: scaffold0042; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 32140 - 32070
Alignment:
Q  98 ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 168  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32140 ggagcatcaggactccaacattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 32070  T

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