View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_56 (Length: 336)
Name: NF15932_low_56
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 28095162 - 28094845
Alignment:
| Q |
1 |
atctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtcattttatcctttgt |
100 |
Q |
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| T |
28095162 |
atctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtcattttatcctttgt |
28095063 |
T |
|
| Q |
101 |
tcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacnnnnnnngtaataagagaatggaagataaaaaagtaattagagt |
200 |
Q |
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| T |
28095062 |
tcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacaaaaaaagtaataagagaatggaagat--aaaagtaattagagt |
28094965 |
T |
|
| Q |
201 |
catatttataccaagaattacatgatgcaaagccattactctaccaattacttaatagatattaatttcaaacatctcataattacaaaacaagataatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094964 |
catatttataccaagaattacatgatgcaaagccattattctaccaattacttaatagatattaatttcaaacatctcataattacaaaacaagataatt |
28094865 |
T |
|
| Q |
301 |
actctgccgctggcacaaac |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
28094864 |
actctgccgctggcacaaac |
28094845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 7035669 - 7035615
Alignment:
| Q |
254 |
aatagatattaatttcaaacatctcataattacaaaacaagataattactctgcc |
308 |
Q |
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|||||||||| ||||||||||||||| |||| ||||||||||||| |||| |||| |
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| T |
7035669 |
aatagatattgatttcaaacatctcacaattccaaaacaagataactactatgcc |
7035615 |
T |
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