View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_low_57 (Length: 335)
Name: NF15932_low_57
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_57 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 2184156 - 2183847
Alignment:
| Q |
14 |
gttattccctgagaagcaaccatagaaacatgaggaaagggcttcttcagtgctgctatatactgaaatccaccaagtgctgaaactggataaatctatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184156 |
gttattccctgagaagcaaccatagaaacatgaggaaagggcttctttagtgctgctatatactgaaatccaccaagtgctgaaactggataaatctatc |
2184057 |
T |
|
| Q |
114 |
acatgaaataccaagctaacatataatgcactgtatattagtgtataaataaattggagagtaaaagacacaagtgaatctacataatcagacagttcta |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184056 |
acatgaaataacaagctaacatataatgcactgtatattagtgtataaataaatcggatagtaaaagacacaagtgaatctacataatcagacagttcta |
2183957 |
T |
|
| Q |
214 |
aatatgcaagctaggaggtactgtgctaatcgaagcagaaatagaacatgaaaaaatgaagtaagtcgtgtctgtcaaatgaatgcattctgtcagtatt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2183956 |
aatatgcaagctaggaggtactgtgctaatcgaagcagaaatagaacatgaaaaaatgaagtaagtcgtgtctgtcaaatgaatgcattttgtcagtatt |
2183857 |
T |
|
| Q |
314 |
tttaacattc |
323 |
Q |
| |
|
|||||||||| |
|
|
| T |
2183856 |
tttaacattc |
2183847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University