View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_61 (Length: 315)
Name: NF15932_low_61
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 31749699 - 31749989
Alignment:
| Q |
15 |
aaaaattaccatattgatggaaacaaagagatgatagctattggaaccatgaacatagttggttctttcacctcttgctacctcacaacaggtaaacatc |
114 |
Q |
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| T |
31749699 |
aaaaattaccatattgatggaaacaaagagatgatagctattggaaccatgaacatagttggttctttcacctcttgctacctcacaacaggtaaacatc |
31749798 |
T |
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| Q |
115 |
atcaccaaatgttaacttcaatattacctttgcccataaatttctgacatgtttttggtataaaaatgataaatctttcagggccattttcgcgctcggc |
214 |
Q |
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| T |
31749799 |
atcaccaaatgttaacttcaatattacctttgcacataaatttctcacatgtttttggtataaaaatgataaatctttcagggccattttcgcgctcggc |
31749898 |
T |
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| Q |
215 |
cgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgttattcttgacacctttg |
305 |
Q |
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| T |
31749899 |
cgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgttattcttgacacctttg |
31749989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 38216223 - 38216128
Alignment:
| Q |
13 |
tcaaaaattaccatattgatggaaacaaagagatgatagctattggaaccatgaacatagttggttctttcacctcttgctacctcacaacaggta |
108 |
Q |
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| T |
38216223 |
tcaaaaattaccatattgatggcaataaagaaatgatagctattggtaccatgaatatttttggttcattaacctcttgctacctcacaacaggta |
38216128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 38216020 - 38215905
Alignment:
| Q |
190 |
tttcagggccattttcgcgctcggccgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgtt |
289 |
Q |
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| T |
38216020 |
tttcaggaccgttttcgcgttcggctgtgaactataatgctgggtgcaagactgcagcatcaaacattgtaatggcaatagcagtgatgttgacattatt |
38215921 |
T |
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| Q |
290 |
attcttgacacctttg |
305 |
Q |
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|||| | ||||||||| |
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| T |
38215920 |
attcctaacacctttg |
38215905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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