View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_67 (Length: 305)
Name: NF15932_low_67
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 45273424 - 45273150
Alignment:
| Q |
11 |
cagagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatga |
110 |
Q |
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| T |
45273424 |
cagagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttgctgtttttgtacaggggatccaccagtaatacaaatga |
45273325 |
T |
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| Q |
111 |
aaatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataattaattatacagaagcgttactgcaaacttcatacac |
210 |
Q |
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| T |
45273324 |
aaatttgctcgaatgatagtataagcttcaattttcatttttcctttgatcattcaaatata----attatacagaaacgttactgcaaacttcatacac |
45273229 |
T |
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| Q |
211 |
aaaaacgnnnnnnngcttaaccataatgttaatagaagctcttaaatgcaaatgaataattgatcatttaagaaaaaag |
289 |
Q |
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| T |
45273228 |
aaaaacgtttttttgcttaaccatattgttaatagaagctattaaatgcaaatgaataattgatcatttaagaaaaaag |
45273150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 45269875 - 45269607
Alignment:
| Q |
12 |
agagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
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| T |
45269875 |
agagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggagatccaccagaaatacaaacgaa |
45269776 |
T |
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| Q |
112 |
aatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataattaattatacagaagcgttactgcaaacttcatacaca |
211 |
Q |
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| T |
45269775 |
aatttgctcgaatgaaagtataagcttcaattttca-------tttgatcattcaaatat-----attattcagaagcgttactgcaagcttcatacaca |
45269688 |
T |
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| Q |
212 |
aaaacgnnnnnnngcttaa-ccataatgttaatagaagctcttaaatgcaaatgaat--aattgatcatttaagaaaaaag |
289 |
Q |
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| T |
45269687 |
aaaacgtttttttgcttaatccatattgttaatagaagctattaaatgcaaatgaataaaattgatcatttaagaaaaaag |
45269607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 45279090 - 45278935
Alignment:
| Q |
17 |
gtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaattt |
116 |
Q |
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| T |
45279090 |
gtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaattatctttcctatttttgtacatgagatccaccagaaatacaaatgaaaattt |
45278991 |
T |
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| Q |
117 |
gctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
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| T |
45278990 |
gctcgaattatagtttaagcttcaattttcattttt-tttttatcattcaaatataa |
45278935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 45281758 - 45281601
Alignment:
| Q |
15 |
gagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaat |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| | ||||| |||| | ||||| |||| ||||||||||||||| |
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| T |
45281758 |
gagtgtgaatgtgatgcatgggtcggagacaaattgttattctttgtaattatctttcgtatttttatacatgagatcccccagaaatacaaatgaaaat |
45281659 |
T |
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| Q |
115 |
ttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
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| T |
45281658 |
ttgctcgaattatagtttaagctttaattttcattttt-tttttatcattcgaatataa |
45281601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 45293101 - 45292941
Alignment:
| Q |
12 |
agagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaa |
111 |
Q |
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||||||||||||||||||||||||| | | ||||||| | |||||||||||| | ||| ||| | ||| | |||| |||||||||| |||||||||||| |
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| T |
45293101 |
agagagtgtgaatgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaa |
45293003 |
T |
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| Q |
112 |
aatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
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| T |
45293002 |
aatttgctcgaattatagtttaagcttcaattttcatttttcttttgatcattcaaatataa |
45292941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 45302061 - 45301901
Alignment:
| Q |
12 |
agagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaa |
111 |
Q |
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||||||||||||||||||||||||| | | ||||||| | |||||||||||| | ||| ||| | ||| | |||| |||||||||| |||||||||||| |
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| T |
45302061 |
agagagtgtgaatgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaa |
45301963 |
T |
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| Q |
112 |
aatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
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||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||| |
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| T |
45301962 |
aatttgctcgaattatagtttaagcttcaattttcatttttcttttgatcattcaaatataa |
45301901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 45278685 - 45278642
Alignment:
| Q |
246 |
aagctcttaaatgcaaatgaataattgatcatttaagaaaaaag |
289 |
Q |
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| T |
45278685 |
aagctgttatatgcaaatgaataatcgatcatttaagaaaaaag |
45278642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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