View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_low_71 (Length: 294)
Name: NF15932_low_71
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_71 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0285 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 35764355 - 35764100
Alignment:
| Q |
1 |
catagaaagaattaacattccctaggttttgagcaaaacaacctagaaaatttccatctttatccctgaacagcccacctgcagcagaagcattaagggg |
100 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35764355 |
catagaaagaactaacattacctaggttttgagcaaaacaacctagacaatttccacctttatccctgaacagcccacctgcag---aagcattaagggg |
35764259 |
T |
|
| Q |
101 |
atgttttgaagccgccccatcagtatttacttttatccaatggaagattggagggcaccagatgacttctttgatttttggagcattaggagggtgaatt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35764258 |
atgttttgaagccgccctatcagtatttacttttatccaatggaagattggagggcaccagatgacttctttgatttttggagcattaggagggtgaatt |
35764159 |
T |
|
| Q |
201 |
ggaactctgaagctcttcaagatcctaaactctctcatgtcaggtgatgaggattttag |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35764158 |
ggaactctgaagctcttcaagatcctaaactctctcatgtcaggtgatgaggattttag |
35764100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 17962924 - 17962988
Alignment:
| Q |
183 |
gcattaggagggtgaattggaactctgaagctcttcaagatcctaaactctctcatgtcaggtga |
247 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| || || |||||||| ||||| |||||||| |
|
|
| T |
17962924 |
gcattaggaggcttgattggaactctgaaactctttaaaatgctaaactccctcatatcaggtga |
17962988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 26229766 - 26229894
Alignment:
| Q |
84 |
gcagaagcattaaggggatgttttgaagccgccccatcagtatttacttttatccaatggaagattggagggcaccagatgacttctttgatttttggag |
183 |
Q |
| |
|
||||||||||| | || | ||||||||| || |||||||| || || |||||||||| |||||||||||| |||| || ||||| ||||| | || | |
|
|
| T |
26229766 |
gcagaagcatttggagggttttttgaagcagcaccatcagtgttcacctttatccaattgaagattggaggagaccaaatcacttccttgatgatagggg |
26229865 |
T |
|
| Q |
184 |
cattaggagggtgaattggaactctgaag |
212 |
Q |
| |
|
| |||||||| |||||||| ||||||||| |
|
|
| T |
26229866 |
ctttaggaggatgaattgggactctgaag |
26229894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 23138941 - 23139049
Alignment:
| Q |
104 |
ttttgaagccgccccatcagtatttacttttatccaatggaagattggagggcaccagatgacttctttgatttttggagcattaggagggtgaattgga |
203 |
Q |
| |
|
|||||||| || |||||||| || || |||||||||| |||||||||||| |||| || ||||| ||||| | || || |||||||| |||||||| |
|
|
| T |
23138941 |
ttttgaagaagcaccatcagtgttcacctttatccaattgaagattggaggagaccaaatcacttccttgatgataggggctttaggaggatgaattggg |
23139040 |
T |
|
| Q |
204 |
actctgaag |
212 |
Q |
| |
|
||||||||| |
|
|
| T |
23139041 |
actctgaag |
23139049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 815613 - 815677
Alignment:
| Q |
183 |
gcattaggagggtgaattggaactctgaagctcttcaagatcctaaactctctcatgtcaggtga |
247 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| || || |||||||| ||||| |||||||| |
|
|
| T |
815613 |
gcattaggaggcttgattggaactctgaaactctttaaaatgctaaactccctcatatcaggtga |
815677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 28688462 - 28688526
Alignment:
| Q |
183 |
gcattaggagggtgaattggaactctgaagctcttcaagatcctaaactctctcatgtcaggtga |
247 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| || || |||||||| ||||| |||||||| |
|
|
| T |
28688462 |
gcattaggaggcttgattggaactctgaaactctttaaaatgctaaactccctcatatcaggtga |
28688526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 38584978 - 38584942
Alignment:
| Q |
258 |
agtgggacatctccttcctctttctctcttcagtatt |
294 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38584978 |
agtgggacatctccttcctctttctcttttcagtatt |
38584942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 14821 - 14916
Alignment:
| Q |
117 |
ccatcagtatttacttttatccaatggaagattggagggcaccagatgacttctttgatttttggagcattaggagggtgaattggaactctgaag |
212 |
Q |
| |
|
|||||||| || || || ||||||| ||| |||||||| ||||||| ||||| || |||| || || |||||||| |||||||||||||||||| |
|
|
| T |
14821 |
ccatcagtgttcaccttaatccaattgaaaattggaggaaaccagataacttccttaatttgaggtgccttaggaggatgaattggaactctgaag |
14916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 23282041 - 23282120
Alignment:
| Q |
117 |
ccatcagtatttacttttatccaatggaagattggagggcaccagatgacttctttgatttttggagcattaggagggtg |
196 |
Q |
| |
|
|||| ||| ||| |||||||||||| |||||||||| || |||||| |||||||| || ||||||| ||||||||||| |
|
|
| T |
23282041 |
ccattagtgtttgcttttatccaattgaagattggatgggtccagataacttctttaatacttggagccttaggagggtg |
23282120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 23592464 - 23592521
Alignment:
| Q |
120 |
tcagtatttacttttatccaatggaagattggagggcaccagatgacttctttgattt |
177 |
Q |
| |
|
|||||||| || || ||||||| ||||||||||||| |||| || ||||||||||||| |
|
|
| T |
23592464 |
tcagtattcaccttgatccaattgaagattggaggggaccatatcacttctttgattt |
23592521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University