View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_74 (Length: 289)
Name: NF15932_low_74
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 5928595 - 5928755
Alignment:
| Q |
115 |
ataacatttcaatggaatattgttttccacactcatgcatgaagtttaaactatcttcaaaccaaggaaaaatctatcaaagtccaattcttggttatat |
214 |
Q |
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| T |
5928595 |
ataacatttcaatggcatattgttttccacactcatgcatagagtttaaactatcttcaaaccaaggaaaaatctatcaaaatccaattcttggttatat |
5928694 |
T |
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| Q |
215 |
gggttctgtatggactaacttctaa----ttaccttttgacattgaagatagctcctgatt |
271 |
Q |
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| T |
5928695 |
gggttctgtatggactaacttctaactatttaccttttgacattcaagatagctcctgatt |
5928755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 5928443 - 5928529
Alignment:
| Q |
10 |
aagaatatattggattcctttagattcaaatgttgtaattgttttagcagtgataatagatagatgtcctacactcatgcatttttt |
96 |
Q |
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| T |
5928443 |
aagaatgtaatggattccttcagattcaaatgttgtaattgttttagcagtgagaatagatagatgtcctaaactcatgcatttttt |
5928529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 44174704 - 44174637
Alignment:
| Q |
10 |
aagaatatattggattcctttagattcaaatgttgtaattgttttagcagtgataatagatagatgtc |
77 |
Q |
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| T |
44174704 |
aagaatgtcttggattcattcagattcaaatgttgtaattgtttaagcagtgagaatagatagatgtc |
44174637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 44174553 - 44174469
Alignment:
| Q |
115 |
ataacatttcaatggaatattgttttccacactcatgcatgaagtttaaa-----ctatcttcaaaccaaggaaaaatctatcaa |
194 |
Q |
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| T |
44174553 |
ataatatttcactggcatattgttttcaacactcatgcatagattttaaagtaaactatcttcaaaccaagcaaaaatctatcaa |
44174469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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