View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_75 (Length: 289)
Name: NF15932_low_75
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_75 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 13718025 - 13717765
Alignment:
| Q |
13 |
aaaatacatgtacatatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaa |
112 |
Q |
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| T |
13718025 |
aaaataaatgtacatatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaagataacgtgaacattagtaacattaa |
13717926 |
T |
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| Q |
113 |
tctaagttaaagatgaaaagccaaaccatattattactacttagtactcaccgcattttcttctaaaatttgaattatatcttttgaagcaataacctac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
13717925 |
tctaagttaaagatgaaaagccaaaccatattattactacttagtactcaccgcattttcttttaaaatttgaattatatcttttgaagccataacctac |
13717826 |
T |
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| Q |
213 |
tgcgttttccagtatattccagtgattcttgtcttaaaatttctttttcatgtcttctacc |
273 |
Q |
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| T |
13717825 |
tgcgttttccagtatattccagtgattcttgtcttaaaatttctttttcatgtcttctacc |
13717765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 29470033 - 29469792
Alignment:
| Q |
13 |
aaaatacatgtacatatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaa |
112 |
Q |
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|||||||||||||||||||||| |||||||| | |||||||| |||| || |||||||| ||||||| ||| ||||| |||| ||||||||||||||| |
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| T |
29470033 |
aaaatacatgtacatatgttagtacttcaactcacctatttatagaatttgacatattgt-aatgggggaaag-ggttaagtgagcattagtaacattaa |
29469936 |
T |
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| Q |
113 |
tctaagttaaagatgaaaagccaaaccatattattactacttagtactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataaccta |
211 |
Q |
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| T |
29469935 |
tcaaacttaaagatgaaaagacaaacc--attcatatcac-tattactcaccgtattttcttctaaaacttgaattatatctttagaggaccataaccta |
29469839 |
T |
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| Q |
212 |
ctgcgttttccagtatattccagtgattcttgtcttaaaatttcttt |
258 |
Q |
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| T |
29469838 |
ctgcgttttccaggatcttcaggtgattcttgtctaacaatttcttt |
29469792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 259
Target Start/End: Original strand, 29673509 - 29673612
Alignment:
| Q |
157 |
tactcaccgcattttcttctaaaatttgaattatatcttttg-aagcaataacctactgcgttttccagtatattccagtgattcttgtcttaaaatttc |
255 |
Q |
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||||||| | |||||||||||||| |||||||||||||| | || | |||||||||| |||||||||| || ||| ||| ||||||||| | |||||| |
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| T |
29673509 |
tactcactgtattttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttc |
29673608 |
T |
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| Q |
256 |
tttt |
259 |
Q |
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|||| |
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| T |
29673609 |
tttt |
29673612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 238364 - 238431
Alignment:
| Q |
157 |
tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttcca |
223 |
Q |
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| T |
238364 |
tactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttcca |
238431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 12590423 - 12590333
Alignment:
| Q |
157 |
tactcaccgcattttcttctaaaatttgaattatatcttttgaag-caataacctactgcgttttccagtatattccagtgattcttgtct |
246 |
Q |
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| T |
12590423 |
tactcacagtattttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtct |
12590333 |
T |
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