View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_77 (Length: 288)
Name: NF15932_low_77
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 47537164 - 47536911
Alignment:
| Q |
17 |
tgaaattagtatttgatcaacatagattgagttggataggtttaatttggtttgaactcgatcattgacgaaaattgaaccaattttattagtttgaatt |
116 |
Q |
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| T |
47537164 |
tgaaactagtatttgatcaacatagattgagttggataggtttaatttggtttgaactcgatcattgacgaaaattgaaccaattttattagtttgaatt |
47537065 |
T |
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| Q |
117 |
gattctttacatgacatcaaagcaagacaaccaatttattttacaagagtattattaaaacatttcacaagagcgacaaacatttattttacaaccaatt |
216 |
Q |
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| T |
47537064 |
ggttctttacatgacatcaaagcaagacaaccaatttattttacaagagtattattaaaacatttcacaagagtgacaaacatttattttacaaccaatt |
47536965 |
T |
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| Q |
217 |
tttcaaaataacaattgcaaccattcaattacacacaagcatgtatcatacaag |
270 |
Q |
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| T |
47536964 |
tttaaaaataacaattgcaaccattcaattacacacaagcatgtatcatacaag |
47536911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 47520761 - 47520678
Alignment:
| Q |
40 |
agattgagttggataggtttaatttggtttgaactcgatcattgacgaaaattgaaccaattttattagtttgaattgattctt |
123 |
Q |
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| T |
47520761 |
agattgagtttgataggtttaatttggtttgaactcgttcattgacaaaaatgtaaccaattttattggtttgaattggttctt |
47520678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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