View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15932_low_78 (Length: 287)

Name: NF15932_low_78
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15932_low_78
NF15932_low_78
[»] chr3 (4 HSPs)
chr3 (1-283)||(290500-290782)
chr3 (123-212)||(280207-280296)
chr3 (18-70)||(8354176-8354228)
chr3 (246-287)||(280051-280092)
[»] chr2 (9 HSPs)
chr2 (9-283)||(24532224-24532497)
chr2 (9-283)||(24525552-24525826)
chr2 (16-70)||(42436450-42436504)
chr2 (18-70)||(1979988-1980040)
chr2 (18-70)||(4789262-4789314)
chr2 (20-68)||(16107393-16107441)
chr2 (23-70)||(106466-106512)
chr2 (40-70)||(16549969-16549999)
chr2 (9-70)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (3-105)||(6015774-6015876)
chr7 (23-105)||(13316515-13316596)
chr7 (25-70)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (3-105)||(12252506-12252608)
chr1 (10-70)||(18172642-18172701)
chr1 (18-105)||(18547889-18547976)
chr1 (20-68)||(2981105-2981153)
chr1 (17-71)||(29101796-29101850)
[»] chr8 (2 HSPs)
chr8 (18-70)||(26588155-26588207)
chr8 (3-105)||(11405864-11405965)
[»] chr6 (3 HSPs)
chr6 (18-70)||(7732693-7732745)
chr6 (20-68)||(24585721-24585769)
chr6 (18-68)||(5090494-5090544)
[»] chr4 (3 HSPs)
chr4 (1-70)||(4442126-4442195)
chr4 (24-90)||(10266447-10266511)
chr4 (24-90)||(10285472-10285536)
[»] chr5 (2 HSPs)
chr5 (18-70)||(14460178-14460230)
chr5 (23-70)||(29286097-29286143)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 290782 - 290500
Alignment:
Q  1 tcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||     
T  290782 tcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatattcatgatatgcaaccttgatcccacttaacgaaatttt 290683  T
Q  101 tggattcattgctgactatgttgacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacatctttatttaagaa 200  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  290682 tggattcgttgctaactatgtcgacagacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaa 290583  T
Q  201 tggccttggcactgcgtaaaatctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacctatgctt 283  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  290582 tggccttggcactgcgtaaaacctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacccatgctt 290500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 280296 - 280207
Alignment:
Q  123 gacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcac 212  Q
    ||||||| |||||||||||  | || | | ||||| ||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  280296 gacagacgcattgaaaggggttgcatcaaaacccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaatgaccttggcac 280207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 8354228 - 8354176
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  8354228 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 8354176  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 280092 - 280051
Alignment:
Q  246 ccaataccttccgatactttgaccgttaacctatgcttctcc 287  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  280092 ccaataccttccaatactttgaccattaacccatgcttctcc 280051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 24532497 - 24532224
Alignment:
Q  9 ataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggattca 108  Q
    |||| ||||||||||||| ||||||||| ||||||| ||||| |||||||||||| |||||  |||||||||||||||||||||  |||||||||||||     
T  24532497 ataatggtgtcatcattt-attggttatgaatttatgtatttctgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcg 24532399  T
Q  109 ttgctgactatgttgacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttg 208  Q
     |||||| ||||| ||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||    
T  24532398 atgctgattatgtcgacagacacattgaaagggcctttacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttg 24532299  T
Q  209 gcactgcgtaaaatctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacctatgctt 283  Q
    ||||||||||| | |||||||||||||||||||||| || ||||||||| |||| |||||| |||||| ||||||    
T  24532298 gcactgcgtaatacctaaaagatgaattttcaccaagccgataccttccaatacattgaccattaacccatgctt 24532224  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 24525826 - 24525552
Alignment:
Q  9 ataacggtgtcatcattttattggttataaatttatatat-ttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggattc 107  Q
    |||| ||||||||||||| ||||||||| ||||||| ||| |||| |||||||||| |||||  |||||||||||||||||||||  |||||||||||||    
T  24525826 ataatggtgtcatcattt-attggttatgaatttatgtatattttttataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattc 24525728  T
Q  108 attgctgactatgttgacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacatctttatttaagaatggcctt 207  Q
      |||||| ||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  24525727 gatgctgattatgtcgacagacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggcctt 24525628  T
Q  208 ggcactgcgtaaaatctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacctatgctt 283  Q
    |||||||||||| | |||||||||||||||||||||| |  ||||||||| ||||||||||| |||||| ||||||    
T  24525627 ggcactgcgtaatacctaaaagatgaattttcaccaagctgataccttccaatactttgaccattaacccatgctt 24525552  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 42436450 - 42436504
Alignment:
Q  16 tgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||||||||||||| |||||||||||| |||||||| || ||||||||||||||    
T  42436450 tgtcatcattttatttgttataaatttacatatttttctagaaatatttatgata 42436504  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 1979988 - 1980040
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  1979988 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 1980040  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 4789314 - 4789262
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  4789314 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 4789262  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 16107441 - 16107393
Alignment:
Q  20 atcattttattggttataaatttatatatttttgtataaatatttatga 68  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  16107441 atcattttaatggttatggttttatatatttttgtataaatatttatga 16107393  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 106466 - 106512
Alignment:
Q  23 attttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  106466 attttattagttataaatttatata-ttttgtataaatatttaagata 106512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 16549999 - 16549969
Alignment:
Q  40 tttatatatttttgtataaatatttatgata 70  Q
    |||||||||||||||||||||||||||||||    
T  16549999 tttatatatttttgtataaatatttatgata 16549969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 3829304 - 3829243
Alignment:
Q  9 ataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    |||| |||||||| |||||||| ||||| |||||| || |||||||| || |||||||||||    
T  3829304 ataatggtgtcataattttatttgttatgaatttaaatgtttttgtaaaactatttatgata 3829243  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 6015774 - 6015876
Alignment:
Q  3 ttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctg 102  Q
    |||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||  |||| ||||||||  | ||||||||    
T  6015774 ttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctg 6015873  T
Q  103 gat 105  Q
    |||    
T  6015874 gat 6015876  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 13316515 - 13316596
Alignment:
Q  23 attttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggat 105  Q
    |||||||| ||||||||||| |||| ||||||||||||||||| ||||  |||  |||| ||||||||  | |||||||||||    
T  13316515 attttattagttataaatttgtata-ttttgtataaatatttaagataaacaatattgaccccacttattgaaatttctggat 13316596  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 17257476 - 17257432
Alignment:
Q  25 tttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||    
T  17257476 tttattagttataaatttatatattttt-tataaacatttatgata 17257432  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 12252506 - 12252608
Alignment:
Q  3 ttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctg 102  Q
    |||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||  |||| ||||||||  | ||||||||    
T  12252506 ttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctg 12252605  T
Q  103 gat 105  Q
    |||    
T  12252606 gat 12252608  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 18172642 - 18172701
Alignment:
Q  10 taacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||| |||| || |||||||||||||||||||||||| |||||||||||||||| |||||    
T  18172642 taacgatgtcttctttttattggttataaatttatata-ttttgtataaatatttttgata 18172701  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 18547976 - 18547889
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggat 105  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||  | | ||||| ||||||| | | |||||||||||    
T  18547976 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccactttatgaaatttctggat 18547889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 2981105 - 2981153
Alignment:
Q  20 atcattttattggttataaatttatatatttttgtataaatatttatga 68  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  2981105 atcattttaatggttatggttttatatatttttgtataaatatttatga 2981153  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 29101850 - 29101796
Alignment:
Q  17 gtcatcattttattggttataaatttatatatttttgtataaatatttatgatat 71  Q
    ||||||||||||| | |||||||||||||||| ||| ||| ||||||||| ||||    
T  29101850 gtcatcattttatcgtttataaatttatatatatttttattaatatttataatat 29101796  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 26588207 - 26588155
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  26588207 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 26588155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 11405864 - 11405965
Alignment:
Q  3 ttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctg 102  Q
    |||| ||||| | ||||||||||||||| |||||||||||| |||||||| || ||||||||| ||||   ||| |||| ||||||||  | ||||||||    
T  11405864 ttaatgataatgatgtcatcattttatttgttataaatttacatattttt-tagaaatatttaagataaataactttgaccccacttattgaaatttctg 11405962  T
Q  103 gat 105  Q
    |||    
T  11405963 gat 11405965  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 7732745 - 7732693
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  7732745 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 7732693  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 24585769 - 24585721
Alignment:
Q  20 atcattttattggttataaatttatatatttttgtataaatatttatga 68  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  24585769 atcattttaatggttatggttttatatatttttgtataaatatttatga 24585721  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 5090544 - 5090494
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatga 68  Q
    ||||||||||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  5090544 tcatcattttatttgttatgaattcatagatttttgtaaaaatatttatga 5090494  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4442195 - 4442126
Alignment:
Q  1 tcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    |||||| ||||| | || ||| ||||| ||||||||| |||||||| ||||||| |||||||||||||||    
T  4442195 tcttaatgataatgatgccattatttttttggttatagatttatatttttttgtttaaatatttatgata 4442126  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 10266511 - 10266447
Alignment:
Q  24 ttttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccactta 90  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||  | | ||||||||||||||    
T  10266511 ttttattggttataaatttaaatgttttt--ataaatatttatgataaacgatcttgatcccactta 10266447  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 10285536 - 10285472
Alignment:
Q  24 ttttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccactta 90  Q
    ||||||||||||| |||||| ||||||||  ||||||||||||||||  | | ||||||||||||||    
T  10285536 ttttattggttatgaatttaaatattttt--ataaatatttatgataaacgatcttgatcccactta 10285472  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 14460230 - 14460178
Alignment:
Q  18 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  14460230 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 14460178  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 29286143 - 29286097
Alignment:
Q  23 attttattggttataaatttatatatttttgtataaatatttatgata 70  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  29286143 attttattagttataaatttatata-ttttgtataaatatttaagata 29286097  T

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