View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15932_low_8 (Length: 585)
Name: NF15932_low_8
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 1182579 - 1182906
Alignment:
| Q |
19 |
agtgtgaatttgaaatgactgatttaggaaaactctcttatttctgaggaatggagtttaaagctagcaagatgggaaa-----tgcatcatcagaagta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1182579 |
agtgtgaatttgaaatgactgatttaggaaaactctcttatttcttaggaatggagtttaaagctagcaagatgggaaaggttatgcatcatcagaagta |
1182678 |
T |
|
| Q |
114 |
cattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaatgtagcaatgaagag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182679 |
cattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaatgtagcaatgaagag |
1182778 |
T |
|
| Q |
214 |
aaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaagtatcagcagtagat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1182779 |
aaagtagaagctacataattcaaaccgatagttggatctctgagatgcctatgcaataacagacctgatatatgctttgcggtaagtatcatcagtagat |
1182878 |
T |
|
| Q |
314 |
acatgaatgatcctagaaaatctcatct |
341 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
1182879 |
acatgaatgatcctaggaaatctcatct |
1182906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 342 - 528
Target Start/End: Original strand, 1183160 - 1183342
Alignment:
| Q |
342 |
tttgcagcttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtggaaaatcctttgaagctgaaatttaataacaaacaaataa |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1183160 |
tttgcagcttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtagaaaatcctttgaagctgaaatttaataaca----aataa |
1183255 |
T |
|
| Q |
442 |
gctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1183256 |
gctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
1183342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 1183580 - 1183627
Alignment:
| Q |
530 |
tttcattaattaatgaaaaccataacaaacttctaacactttcttctc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1183580 |
tttcattaattaatgaaaaccataacaaacttcaaacactttcttctc |
1183627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 97 - 341
Target Start/End: Original strand, 26076108 - 26076352
Alignment:
| Q |
97 |
atgcatcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatg |
196 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| ||| | |||| |||||||| | || ||||||| ||||||||||||||||| || |||| |
|
|
| T |
26076108 |
atgcatcaacagaagtacattggagaactgcttgaaagatttcaaatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatg |
26076207 |
T |
|
| Q |
197 |
aatgtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggt |
296 |
Q |
| |
|
||||||| |||||||| || | || |||| ||||||||| |||||| ||||| || |||||| ||||||| |||||||| |||||||||||||| || |
|
|
| T |
26076208 |
aatgtagtaatgaagaaaaggcggagtctactgaattcaaacagatagtgggatcactaagatacttatgcaacaacagaccagatatatgctttgcagt |
26076307 |
T |
|
| Q |
297 |
aagtatcagcagtagatacatgaatgatcctagaaaatctcatct |
341 |
Q |
| |
|
|||||| | |||||||| |||||||||||| || || |||||||| |
|
|
| T |
26076308 |
aagtataatcagtagattcatgaatgatccaaggaagtctcatct |
26076352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 5706782 - 5706834
Alignment:
| Q |
349 |
cttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtg |
401 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
5706782 |
cttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtg |
5706834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 97 - 326
Target Start/End: Complemental strand, 4958831 - 4958602
Alignment:
| Q |
97 |
atgcatcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatg |
196 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| ||| | |||| |||||||| | || ||||||| ||||||||||||||||| || |||| |
|
|
| T |
4958831 |
atgcatcagcagaagtacattggagaactgcttgaaatatttcaaatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatg |
4958732 |
T |
|
| Q |
197 |
aatgtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggt |
296 |
Q |
| |
|
|||| || |||||||| || || || |||| ||||||||| |||||| ||||| |||||||| ||||||| |||||||| ||||||||||||| || |
|
|
| T |
4958731 |
aatgcagtaatgaagaaaaggtggagtctactaaattcaaacagatagtgggatcattgagatacttatgcaacaacagaccatatatatgctttgcagt |
4958632 |
T |
|
| Q |
297 |
aagtatcagcagtagatacatgaatgatcc |
326 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |
|
|
| T |
4958631 |
aagtatcatcagtagattcatgaatgatcc |
4958602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 101 - 341
Target Start/End: Original strand, 12370527 - 12370767
Alignment:
| Q |
101 |
atcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatgaatg |
200 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||| ||| | |||| |||||||| | || ||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
12370527 |
atcagcagaagtacattggataactgcttgaaagatttcaaatgattgattgcaataatgcatcaaatccatctgaaacaaatgctaaactagatgaatg |
12370626 |
T |
|
| Q |
201 |
tagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggtaagt |
300 |
Q |
| |
|
|| |||||||| || || || |||| ||||||||| ||||| ||||| ||||||||| ||||||| | |||||| |||||||||||||| |||||| |
|
|
| T |
12370627 |
cagtaatgaagaaaaggtggagtctactgaattcaaacatatagtgggatcactgagatacttatgcaacagcagaccagatatatgctttgcagtaagt |
12370726 |
T |
|
| Q |
301 |
atcagcagtagatacatgaatgatcctagaaaatctcatct |
341 |
Q |
| |
|
|||| |||||||| |||||||||||| || || |||||||| |
|
|
| T |
12370727 |
atcatcagtagatgcatgaatgatccaaggaagtctcatct |
12370767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 96 - 341
Target Start/End: Original strand, 5242921 - 5243161
Alignment:
| Q |
96 |
aatgcatcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggat |
195 |
Q |
| |
|
||||||||| || ||||| ||||| |||||||| || ||||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
5242921 |
aatgcatcaacaaaagtatattggggaactgcttga----tttgatatggtagattgtaacactgcaactaatccttctgaaacaaatgctaagctagat |
5243016 |
T |
|
| Q |
196 |
gaatgtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcgg |
295 |
Q |
| |
|
||||| | ||||||||||||||||||| |||| |||||| | |||| | ||| | |||||||| |||| |||| ||||| |||||||||||||| | |
|
|
| T |
5243017 |
gaatgcatcaatgaagagaaagtagaacctactgaattcatgcagataatagga-ccatgagatacttatgtaatagtagaccagatatatgctttgcag |
5243115 |
T |
|
| Q |
296 |
taagtatcagcagtagatacatgaatgatcctagaaaatctcatct |
341 |
Q |
| |
|
||||||||| || |||| |||||||||||| || || |||||||| |
|
|
| T |
5243116 |
taagtatcattagaagattcatgaatgatccaaggaagtctcatct |
5243161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 5243516 - 5243601
Alignment:
| Q |
443 |
ctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
528 |
Q |
| |
|
|||| ||| ||||||| |||| ||| ||||||| || || |||||| ||||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
5243516 |
ctataaatttagctaacaatctaataacacatggtaggagaaaacacattgaaactaggtttcatttcataagggaacaagtgaca |
5243601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 97 - 341
Target Start/End: Complemental strand, 32368865 - 32368621
Alignment:
| Q |
97 |
atgcatcatcagaagtacattggtgaactgctagaaaagtttgatatgacagattgcaacactgtcacaaatccttctgaaacaaatgctaagctggatg |
196 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| |||| |||| | |||| || ||||||| || | ||||| |||||||||||||||||| |||||| |
|
|
| T |
32368865 |
atgcatcaacaaaagtacattggggaactgcttgaaaggtttcaaatgattgactgcaacattgcatcgaatccatctgaaacaaatgctaagttggatg |
32368766 |
T |
|
| Q |
197 |
aatgtagcaatgaagagaaagtagaagctacataattcaaaccgatagttggatctctgagatacctatgcaataacagacctgatatatgctttgcggt |
296 |
Q |
| |
|
| |||| |||||||| | |||| || |||| ||||||||| |||||| ||||| ||| ||| ||||||| |||| ||| ||||||| |||||| || |
|
|
| T |
32368765 |
agtgtactaatgaagaaagagtaaaacctactgaattcaaacagatagtgggatcattgatgtacttatgcaacaacaaaccagatatatcctttgcagt |
32368666 |
T |
|
| Q |
297 |
aagtatcagcagtagatacatgaatgatcctagaaaatctcatct |
341 |
Q |
| |
|
|||||||| | |||| | |||||||||||| || ||||||||||| |
|
|
| T |
32368665 |
aagtatcatcggtaggttcatgaatgatccaaggaaatctcatct |
32368621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 18641491 - 18641439
Alignment:
| Q |
349 |
cttgtcaagcaatttggctggatacagtgatgaaagagctaaactgtgaagtg |
401 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
18641491 |
cttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtg |
18641439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 503
Target Start/End: Complemental strand, 32368201 - 32368156
Alignment:
| Q |
458 |
agaatcctatagcacatggaagaagtaaacacgttgaaactaggtt |
503 |
Q |
| |
|
||||||| ||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
32368201 |
agaatccaatagcacatggcaggagtaaacacattgaaactaggtt |
32368156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 32368949 - 32368905
Alignment:
| Q |
18 |
cagtgtgaatttgaaatgactgatttaggaaaactctcttatttc |
62 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| || |||||| |
|
|
| T |
32368949 |
cagtgtgaatttgaaatgacttatttaggaagactatcatatttc |
32368905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 9636620 - 9636687
Alignment:
| Q |
254 |
tgagatacctatgcaataacagacctgatatatgctttgcggtaagtatcagcagtagatacatgaat |
321 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
9636620 |
tgagatacttatgcaataccagacctgacatatgctttgaaataagcttcaccagtagatacatgaat |
9636687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 33717140 - 33717078
Alignment:
| Q |
289 |
tttgcggtaagtatcagcagtagatacatgaatgatcctagaaaatctcatctt-ttgcagct |
350 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
33717140 |
tttgcagtaagtatcatcaatagatacatgaatgatccgtgaaaatctaatcttattgcagct |
33717078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University