View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_86 (Length: 272)
Name: NF15932_low_86
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 13473685 - 13473882
Alignment:
| Q |
33 |
acaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttgcgaacgtatgtaaaccg |
132 |
Q |
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| T |
13473685 |
acaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttacgaacgcatgtaaaccg |
13473784 |
T |
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| Q |
133 |
cttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcaccttctcaaatgttggagccatagaagga |
232 |
Q |
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| T |
13473785 |
cttaacagatttgacaggaagtttagagagaatac--agtacaatatcatcgggtatatagctactactcaccttctcaaatgttggagccatagaagga |
13473882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 13473889 - 13473925
Alignment:
| Q |
227 |
gaaggagtacaactaaatcatgtaagcacaggttctg |
263 |
Q |
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| T |
13473889 |
gaaggagtacaactaaatcatgtaaccacacgttctg |
13473925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 9763572 - 9763456
Alignment:
| Q |
93 |
caaacaaaagtgaccatggtttgcgaacgtatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtata |
192 |
Q |
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| T |
9763572 |
caaacaaaagagaccatgatttgcgaacacaagaaaaatgcttaacagatttaacaggaagtttagagagaatacagaaagcaatgtcatctggtatata |
9763473 |
T |
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| Q |
193 |
gctactactcaccttct |
209 |
Q |
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| T |
9763472 |
gctactactaaccttct |
9763456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 40399838 - 40399874
Alignment:
| Q |
198 |
tactcaccttctcaaatgttggagccatagaaggagt |
234 |
Q |
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| T |
40399838 |
tactcaccttctcaaatgttggagccatggaaggagt |
40399874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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