View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15932_low_90 (Length: 256)
Name: NF15932_low_90
Description: NF15932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15932_low_90 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 48121097 - 48120858
Alignment:
| Q |
17 |
catgagagccaatagcagtagaaatttccctggaagaacatacaggttttacaatgggaaatccctctatgaatttggctatggattaagctactccaca |
116 |
Q |
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| T |
48121097 |
catgagagccaatagcagtagaaatttccctggaagaacatacaggttttacaatgggaaatccctctatgaatttggctatggattaagctactccaca |
48120998 |
T |
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| Q |
117 |
ttctccacccacatagcatctgctccttcctccataatgatccagaaaaacacatccatttcaaaaccacttaacaatatcttccttgatgatcaagtaa |
216 |
Q |
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| T |
48120997 |
ttctccacccacatagcatctgctccttccaccataatgctccagaaaaacacatccatttcaaaaccacttaataatatcttccttgatgatcaagtaa |
48120898 |
T |
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| Q |
217 |
ttgatatctccaccataagttgtttcaatttgacattttc |
256 |
Q |
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| T |
48120897 |
ttgatatctccaccataagttgtttcaatttgacattttc |
48120858 |
T |
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