View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15933_low_1 (Length: 586)
Name: NF15933_low_1
Description: NF15933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15933_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 88 - 447
Target Start/End: Complemental strand, 48066152 - 48065797
Alignment:
| Q |
88 |
cgtatgacgataggaaaagacaaaatttgaatatggggtgaggnnnnnnnnnnnncaccatagaagataatgcaaatacatgaacggtagaaaatttgaa |
187 |
Q |
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| T |
48066152 |
cgtatgacgataggaaaagacaaaatttgaatatggggtgaggaaaaaacaaaaacaccatagaagataatgcaaatacatgaacggtagaaaatttgaa |
48066053 |
T |
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| Q |
188 |
tgaagggaaatcctcctattccaaggtgcaattttttaggtgaaaaatttaaaaaacttgtagctaaaattataacatttagaaccacaaacaaacttgg |
287 |
Q |
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| T |
48066052 |
tgaagggaaatcctcctattccaaggtgcaattttttaggtgaaaaatttaaaaaagttgtagctaaaattataacatttagaaccacaaacaaacttgg |
48065953 |
T |
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| Q |
288 |
taagttacaatcttagtaaaaagataaagaccacatacatacatataccccactcaatccgtacttcaaaccatatccgggtgaataatcattatcttcc |
387 |
Q |
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| T |
48065952 |
taagttacaatcttagtaaaaagataaagaccacata----catataccccactcaatccgtacttcaaaccatatccgggtgaataatcattgtcttcc |
48065857 |
T |
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| Q |
388 |
ctctcaaacgttttcttctcttaacaacctcaaatttctaccttcaacctaaacaagtaa |
447 |
Q |
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| T |
48065856 |
ctctcaaacgttttcttctcttaacaacctcaaatttctaccttcaacctaaacaagtaa |
48065797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 512 - 568
Target Start/End: Complemental strand, 48065736 - 48065680
Alignment:
| Q |
512 |
ctaaactcgaccttagcatgttgttttcttggggaagaagattccaacagactctac |
568 |
Q |
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| T |
48065736 |
ctaaactcgaccttagcatgttgttttcttggggaagaagattccaacagactctac |
48065680 |
T |
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