View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15933_low_3 (Length: 462)
Name: NF15933_low_3
Description: NF15933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15933_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 5873042 - 5872614
Alignment:
| Q |
18 |
atgtatttaagtatggtttataccgttttgttccatataaaaaatgatacattaaatgaacatactattgatttgctcgaaaatgcctcattcttctaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
5873042 |
atgtatttaagtatggtttataccgttttgttccatataaaaaatgatacattaaatgaacatactattcatttgctcgaaaatgcctcatgcttctaaa |
5872943 |
T |
|
| Q |
118 |
atctgaaagattttatccaacaaaaagtcattttcatgccatgccaacagcattaccatttctgatagcataagggattgaatgagacctaacaacaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5872942 |
atctgaaagattttatccaacaaaaagtcattttcatgccatgccaacagcattaccatttctgatagcataagggattgaatgagacctaacaacaaac |
5872843 |
T |
|
| Q |
218 |
aaaacgtgatgactgtagagttgagtgtgacaatagaagcacaaatataatgtcttattgtattaaattttttatattcattttattcctcaattttgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5872842 |
aaaacgtgatgactgtagagttgagtgtgacaacagaagcacaaatataatgtcttattgtattaaattttttatattcatttgattcctcaattttgaa |
5872743 |
T |
|
| Q |
318 |
gtgcttccttgcaccaaattttcaaatggaattaaatgtttcttggaactttctacagttatacattcagttccttacagataatgtgacaaaaatgcca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5872742 |
gtgcttccttgcaccaaattttcaaatggaattaaatgtttcttggaactttctacagttatacattcagttccttacagataatgtgacaaaaatgcca |
5872643 |
T |
|
| Q |
418 |
tcatctctgtatgattagtaactattact |
446 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5872642 |
tcatctctgtatgattagtaactattact |
5872614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University